Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1639 194 2e-44 >seq1639 Length=5101707 Score = 194 bits (214), Expect = 2e-44 Identities = 503/747 (67%), Gaps = 25/747 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| ||||| ||||||||||| ||||| |||| ||||| || | Sbjct 2279461 TTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGTT 2279520 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| |||||||| || | | ||| |||||| || | | | | Sbjct 2279521 CCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTACCCAAGAGCACCCAAAA 2279580 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||| ||||| || ||||| || | ||| || || | |||||| || | | || Sbjct 2279581 GCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACCA-AC 2279639 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT- 16911 | | |||||| || || || ||| | ||| || | ||||| || || || Sbjct 2279640 GCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCGACCGCATCACAAACGATT 2279699 Query 16912 -ACTAGCAACTCGTTCCTCGGACGG-TGTATGTTTAAGA-TGTTTAAACATCAGACATGC 16968 ||| | || |||| || | | | | | || | || ||| || | | || || || Sbjct 2279700 GACTTGATAC--GTTCTTCACTCAGCTTTGTTTTGAGGAGTGTGTAGAG-TAAG-CAAGC 2279755 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||||||| ||||| || ||||||| ||| | |||||| || || || ||||| || Sbjct 2279756 GAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGG 2279815 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||||||||||| | ||| || || | | || ||||| ||||| || || Sbjct 2279816 CATGAGACCTCGTTTCTTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCC 2279875 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 || || | || || || | | |||||| ||| | || | || || ||||| Sbjct 2279876 TTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGT--CG-ATCCA 2279932 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA- 17207 |||| | |||||| ||||| | | | |||| |||||||| || || ||||| Sbjct 2279933 TTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAG 2279992 Query 17208 ---ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 || ||||| || ||| || | ||||||||||||| || || || ||||| | Sbjct 2279993 ATGATCTCTCTCTT---TGT-TATCTTTGATATACGTATCGAGAAGGAGACTATACATCT 2280048 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATT 17323 ||||||| ||||| || || || ||||| || || || |||||| || || |||| | | Sbjct 2280049 CGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCCGAGACT 2280107 Query 17324 TGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 ||||| || || | |||||| || ||||| || |||||| ||||| ||||| Sbjct 2280108 TGAACATCGGACAT-GAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGC 2280166 Query 17383 GAAAAACGCCAATATATGCTTAATGAA 17409 ||| || || | | || || ||||| Sbjct 2280167 GAAGAAAGCGAGGACGTGTTTGATGAA 2280193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533023641920