Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1639 201 1e-46 >seq1639 Length=5101707 Score = 201 bits (222), Expect = 1e-46 Identities = 501/744 (67%), Gaps = 19/744 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||||| ||| ||||| ||||| ||||| ||||| |||| | ||| || || Sbjct 2279461 TTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGTT 2279520 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| |||||||||||||||| || | | |||| |||||| || | | | Sbjct 2279521 CCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTACCCAAGAGCACCCAAAA 2279580 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGT 16090 ||||| || ||||| || ||||| |||| ||| || || | || || || | || Sbjct 2279581 GCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACCAACG 2279640 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || ||||| || | | ||| | | || ||| | ||||| || || ||| Sbjct 2279641 CGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCGACCGCATCACAAACGATT 2279699 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTT-AGGTGTTTAAACATTAGACACGCGAA 16209 || ||| |||| | | | || ||| ||| || | | | || || ||||| Sbjct 2279700 GACTTGATACGTTCTTCACTCAGCTT-TGTTTTGAGGAGTGTGTAGAGTAAGCAAGCGAA 2279758 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||||| |||| |||||||||| ||| | |||||| || ||||||||||| ||||| Sbjct 2279759 ATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCAT 2279818 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGAATATACCCT 16328 ||||||||||| | |||||| || | |||||| | || || ||||| || || | Sbjct 2279819 GAGACCTCGTTTCTTAAGCCAGAAGAT-GGAGCAAAAGCTTCCAGAGAAGAAGATGCCTT 2279877 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTACGAATCC 16385 ||||| | || ||||| | | |||||| ||| | || || ||| | || |||| Sbjct 2279878 CAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAG-ATCCGT----CG-ATCC 2279931 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 ||||| |||| | ||||| | | ||| |||||||| || || ||| | Sbjct 2279932 ATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATA 2279991 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | ||| | || | |||| | ||||||||||| | || | ||| ||||| || | Sbjct 2279992 GATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCGG 2280051 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCTATTTGT 16564 |||| ||||| || || || ||||| || |||||| ||||| || ||||||| | ||| Sbjct 2280052 AGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCCGAGACTTGA 2280110 Query 16565 ACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 || || || | ||||| || || ||||| |||||| |||||| ||| || || Sbjct 2280111 ACATCGGACAT-GAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGCGAA 2280169 Query 16624 AAACGCCAATATGTGCTTAATGAA 16647 || || | | ||| || ||||| Sbjct 2280170 GAAAGCGAGGACGTGTTTGATGAA 2280193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401972630080