Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1639 158 1e-33 seq1604 86.0 7e-12 >seq1639 Length=5101707 Score = 158 bits (174), Expect = 1e-33 Identities = 406/606 (67%), Gaps = 23/606 (4%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || |||||||||||||||| || ||||||| || |||||||| || || || Sbjct 2279748 AAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTT 2279807 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAA 24250 | || ||||| || || || || |||||||| || ||||| ||||| | | ||||| || Sbjct 2279808 AACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAA 2279866 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT- 24309 ||| || ||||| || || || || | || || ||| | | | || || Sbjct 2279867 GAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATC 2279922 Query 24310 -GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 || ||||| || ||||| | || ||||| || ||||| || || || || | Sbjct 2279923 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||| |||| | | | || || ||||||| | ||| ||||| | | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || |||||||||||||| || || || || || |||||| | ||||| | Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCG 2280102 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | || || || ||| ||||| || | ||| || ||| ||||||||| Sbjct 2280103 AGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGAT 2280161 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTT 24601 || || || || || | || ||||| || || | || |||| | | | | | || Sbjct 2280162 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTG-TT 2280220 Query 24602 ATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 | |||||| |||| |||| |||| ||| |||||||| | ||||| || ||||| Sbjct 2280221 CTCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGC 2280277 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || || || ||||| | |||||| || | || || ||||| || ||| ||||| Sbjct 2280278 TTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCT 2280337 Query 24719 ATTTGG 24724 | ||| Sbjct 2280338 GTCTGG 2280343 >seq1604 Length=1253100 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | || | ||| || | || | || | || |||||||| |||||| Sbjct 402929 TCCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACC 402988 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || || || |||||| | |||||||||||| | ||| Sbjct 402989 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGA 403048 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 403049 AACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 403108 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 |||||| || |||||||| ||||| | ||||| ||||| Sbjct 403109 GCCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707172565120