Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1396 98.7 9e-16 seq1208 98.7 9e-16 seq793 98.7 9e-16 >seq1396 Length=1446835 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| || || ||||| || || ||| | | Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || |||||| || || || ||| | || || || Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || |||||||| ||||| || |||| |||| || ||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||| |||||| |||| || || | || ||||| Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 400375 >seq1208 Length=4595443 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| | || | | Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCTCT 3925410 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| || || |||| | || || || Sbjct 3925411 GATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACCAG 3925470 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| |||||||||| || |||| |||||||| Sbjct 3925471 CAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAAC 3925530 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || ||| |||| | || ||| |||| || Sbjct 3925531 ATCCAGAAGGAATCAACGCTCCACTTGGTTCTCCGGTTAGGAGGTGG 3925577 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| ||||| || ||| || | | Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| || ||||||||||| | || || || Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| || |||||| | || ||||||||||||| Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || || ||| |||| | || ||| |||| || Sbjct 610887 ATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGG 610933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325851649320