Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1396 113 4e-20 seq793 107 2e-18 seq1208 104 2e-17 seq236 104 2e-17 seq1328 98.7 8e-16 seq1177 86.0 5e-12 seq1125 82.4 6e-11 >seq1396 Length=1446835 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| || | || |||||||| || ||||||||||| ||| Sbjct 400831 CCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 400772 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||||||||| || | || || | |||||||||| || Sbjct 400771 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 400712 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || ||| | |||| Sbjct 400711 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACC 400652 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || || ||||| || || || ||||| || || ||||| Sbjct 400651 TCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| ||||| |||| ||| | |||| || || ||||| || Sbjct 400345 GTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCA 400286 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||||| || | || |||||||| || || ||| Sbjct 400285 GCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGAATTTTAGCTTTG 400226 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | |||| |||| || |||||||| || || ||||| Sbjct 400225 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAACGTC 400166 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 400165 TTGACGAAAATTTGCAT 400149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || || ||||| || ||||| ||||| ||| Sbjct 401059 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 401000 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| |||||||| || || | || || | ||||||||| || Sbjct 400999 AGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 400940 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || || | |||| Sbjct 400939 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 400880 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| |||||||| || || || || || ||||| Sbjct 400879 TCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 >seq793 Length=772624 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||| ||||| ||||| || || ||| |||| || ||||| || || Sbjct 611131 GTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCG 611072 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || || ||||||||| || | ||||||||||| ||||||| ||| Sbjct 611071 GCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTG 611012 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||||| | ||| |||| |||||||||||||| || | || Sbjct 611011 ACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTC 610952 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 610951 TTGACAAAGATCTGCAT 610935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | || ||| |||| || | || || || || |||||||| || || ||| Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || |||||||| || || | || | ||| ||||||||| || Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || ||||||| || || | | ||| || ||| | ||| Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | || ||||||||||| || | ||||| || || |||||||| | ||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGGAA 610701 >seq1208 Length=4595443 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | |||||||| ||||| ||||| ||||| || || || || | ||| Sbjct 3925790 AGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCC 3925731 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | ||||| ||||||||||| || | ||||||||||| Sbjct 3925730 TCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCT 3925671 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | | ||||||| | || |||| || ||||| Sbjct 3925670 TGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTT 3925611 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||||| || ||||| || ||||| || ||| Sbjct 3925610 TTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| | || ||| |||| || | || || ||||| || ||||| || || Sbjct 3925580 TTACCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCT 3925521 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 |||| ||| | || ||||||||||| || || | || | ||| ||||||||| Sbjct 3925520 GCCAAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGA 3925461 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | | |||||||||| |||||| || || | | ||| ||||||| | ||| Sbjct 3925460 GGAATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCT 3925401 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 | || | |||||||||||||| || | ||||| || || |||||||| | ||| Sbjct 3925400 ATCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGGAA 3925345 >seq236 Length=1640546 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || || ||||| || ||||| ||||| || Sbjct 1089261 CCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCG 1089202 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || |||||||| || || |||| | || |||||||||| || Sbjct 1089201 AGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 1089142 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | ||| || || || ||| Sbjct 1089141 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACC 1089082 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || |||| ||||| || || || ||||| || Sbjct 1089081 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1089032 >seq1328 Length=1576597 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 |||| || ||| || |||| || | || |||||||||||||| || | || |||| Sbjct 273104 CCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAA 273045 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || | || || |||||||| || ||| |||||||||||||||||||| || | Sbjct 273044 GTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATT 272985 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 |||||||| || ||||||| || || | | | | || || | || || Sbjct 272984 CCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCA 272925 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || ||||||||||| || | || || ||||| |||||||| Sbjct 272924 AGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1177 Length=2734319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | || ||| |||| || | || || || || || ||||| || || ||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || |||||||| || || | || | ||| ||||||||| || Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | | ||| || || | ||| Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || |||| ||||| || || |||||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1125 Length=2998257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||| ||||| || | |||| | |||| || ||||| || || Sbjct 292779 GTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCG 292838 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | || |||||||||| || | ||||||||||| |||||| || Sbjct 292839 GCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 292898 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | ||| || | ||| || ||||| || |||| ||| Sbjct 292899 ACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTT 292958 Query 21159 TTGACAAATATTTGCATTTT 21178 || || || || ||||| || Sbjct 292959 TTCACGAAGATCTGCATCTT 292978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249195623904