Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1639 172 6e-38 seq236 132 5e-26 seq1125 123 3e-23 seq1396 114 1e-20 seq1177 114 1e-20 seq793 111 2e-19 seq204 98.7 1e-15 seq1208 96.9 4e-15 >seq1639 Length=5101707 Score = 172 bits (190), Expect = 6e-38 Identities = 397/591 (67%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 116612 ATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTC 116671 || ||||| || || ||||| || || ||| |||||||| || ||||| || |||||| Sbjct 2280328 ATGTTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTC 2280269 Query 116672 TGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC---TTGAAC 116728 ||||||| || || || || || || | |||| |||| |||||| | | ||| Sbjct 2280268 TGGACCGCTGAAGAAGTAGATCTATCACAAGACAATCGCGATTGGGAGAACAATCTCAAC 2280209 Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 ||| || || || |||||||| ||||| || || || |||||||| ||||| ||| Sbjct 2280208 GACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATC 2280149 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGC 116848 || |||||||| | || ||| || || || || | ||||||| |||| Sbjct 2280148 GTGTTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGC-GTGC 2280090 Query 116849 -TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCAT 116907 ||||| || || |||||||| || || ||| | ||||| || |||||| ||| | Sbjct 2280089 TTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCT 2280030 Query 116908 CGACACGTACGTGCGCTCTTCGGAGGAGA-AGCTCCGTTTGTTGAACGCCATCGAGACGA 116966 ||| ||||| | | | |||| || | | | | || ||| || || |||| Sbjct 2280029 CGATACGTATATCAAAGATAACAAAGAGAGAGAT-CATCTATTTCGCGCGATTGAAACGA 2279971 Query 116967 TGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG--CAGAGAGGC 117024 | || |||||| |||| || |||||||| || ||||||| ||| | | | Sbjct 2279970 TTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAAA--- 2279914 Query 117025 CGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAG 117084 |||||| || || | || || ||||| || || ||| ||||||| || || || Sbjct 2279913 --CCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAG 2279856 Query 117085 TTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144 || | |||| || ||||| |||||||| || |||||||| || | |||||| || Sbjct 2279855 CTTTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAA 2279796 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 ||| | ||||| | ||||| || | || ||||| || || || || || Sbjct 2279795 CGAATTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCTTGCTTACT 2279745 >seq236 Length=1640546 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || ||||| || ||||| ||| | || ||||| | Sbjct 1089031 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAGTC 1089090 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | | | | || | || || | ||||| || || ||||| |||| Sbjct 1089091 CTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1089150 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | || | ||| || |||||||| || |||| ||||| ||| |||||| Sbjct 1089151 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGCACTCTCGCCGACTA 1089210 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| | ||||| ||||| || Sbjct 1089211 CAACATCCAGAAGGAATCAACGCTTCATCTCGT 1089243 >seq1125 Length=2998257 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || ||||| || || |||||| |||| ||||| | Sbjct 292979 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTC 292920 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||||| || || | ||||| || || ||||| |||| Sbjct 292919 TTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGA 292860 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | || | ||| || || ||||| || |||| || ||| | |||||| Sbjct 292859 CCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCTTAGCCGACTA 292800 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| | ||||| || || || Sbjct 292799 CAACATCCAGAAGGAATCAACGCTTCACCTTGT 292767 >seq1396 Length=1446835 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || |||||| |||| || ||| | | Sbjct 399921 ATGCAAATTTTCGTCAAAACCCTAACTGGGAAGACTATCACCCTCGAGGTGGAAAGCTCT 399980 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || | | | ||||| ||||| ||||| |||| || Sbjct 399981 GACACAATCGACAACGTTAAAGCTAAGA-TCCAGGACAAGGAGGGTATCCCACCGGATCA 400039 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || || || || |||| | |||||| |||||||| Sbjct 400040 GCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTCGCTGACTACAA 400099 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 400100 CATCCAGAAGGAGTCAACCCTTCATCTTGT 400129 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || || || | || Sbjct 400833 ATGCAGATTTTCGTGAAGACTTTAACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCC 400892 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || ||||| | ||||| Sbjct 400893 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCA 400951 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || |||||||| || |||| ||||| || |||||||| Sbjct 400952 GCAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGTCGCACACTGGCTGACTACAA 401011 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 401012 CATCCAGAAGGA 401023 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||| |||||| | || || || | | Sbjct 400605 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACCTTGGAGGTGGAGAGCTCT 400664 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || || || ||||||| Sbjct 400665 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 400723 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||||||||| || || | ||||| | ||||| || Sbjct 400724 GCAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTATAA 400783 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 400784 CATCCAGAAGGAGTCGACCCTTCA 400807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | || || || |||||||| | || || || | || Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||||| ||||| ||||| || || |||||||| Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||| || || |||| | || | ||||||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || || || | || ||||| Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCG 400363 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || | | Sbjct 400377 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 400436 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| || || || || ||||| ||||||| Sbjct 400437 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCGGACCA 400495 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || ||| |||| || | || ||| | || ||||| Sbjct 400496 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGATTACAA 400555 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| | || || || | || ||||| Sbjct 400556 CATCCAGAAAGAGTCAACCCTTCACTTGGTCTTGCG 400591 >seq1177 Length=2734319 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || |||||||| | || ||||| | || Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||| || | ||||| || ||||| || |||||||| Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 987846 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || |||||||| || || | |||||| | ||| |||||| Sbjct 987847 CAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAAC 987906 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 987907 ATCCAGAAAGA 987917 >seq793 Length=772624 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | | Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||| || | || ||||| ||||| || |||||||| Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || |||||||| || || | || ||| | ||| |||||| Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 40870 ATCCAGAAGGA 40880 || ||||| || Sbjct 610887 ATTCAGAAAGA 610897 >seq204 Length=2333866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| ||||| || ||||| || || || ||| | || || ||| | Sbjct 1139132 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATC 1139191 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | | || | || || | ||||| || || ||||| |||| Sbjct 1139192 ATCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1139251 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | |||| ||| || ||||| |||| |||| | || ||| ||| || Sbjct 1139252 TCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 1139311 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| || | || || ||| | ||| Sbjct 1139312 CAACATCCAGAAAGAATCAACTCTTCATTTGGTG 1139345 >seq1208 Length=4595443 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||| ||||| || |||| | || | | Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCTCT 3925410 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||| |||| ||||| || | ||| || ||||||| Sbjct 3925411 GATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACCAG 3925470 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||||||||| || || ||| | || |||||| Sbjct 3925471 CAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAAC 3925530 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| | ||||| || Sbjct 3925531 ATCCAGAAGGAATCAACGCTCCA 3925553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || ||||| || | || || || | | | Sbjct 3925807 ATGCAAATTTTTGTGAAGACCCGTACTGGAAAGACCATTACTTTGGAGGTTGAGGGCTCA 3925866 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || ||| ||||| ||||| ||||| | |||||| Sbjct 3925867 GACACAATCGATAATGTCAAGGCGAAGATTGAGGACAAGGAGGGGATCCCACCAGACCAG 3925926 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| | || || ||||| || || | ||||| ||| || |||||| Sbjct 3925927 CAGAGACTCATCTTTTCCGGTAAGCAGCTCGAAGATGGACGCACACTCGCTGATTACAAC 3925986 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| | || || ||| | ||| Sbjct 3925987 ATCCAAAAGGAGTCTACCCTCCATTTGGTG 3926016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206680173440