Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1328 125 1e-23 seq204 116 6e-21 seq1208 111 2e-19 seq793 111 2e-19 seq406 104 4e-17 seq971 95.1 2e-14 seq1177 93.3 6e-14 seq1810 91.5 2e-13 >seq1328 Length=1576597 Score = 125 bits (138), Expect = 1e-23 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| || || ||||| || |||||| | ||| ||||| Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTCC 272940 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| |||| || || || |||||||| ||||| || || || || || Sbjct 272941 GACACAATTGACAATGTTAAGGCA-AAGATCCAAGATAAGGAAGGAATCCCTCCGGACCA 272999 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||||||||| || ||||| | || ||| | || || || | ||| | || Sbjct 273000 GCAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACAA 273059 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTAT 124768 ||||||||| || ||||| | || |||||| ||| ||| | |||| | ||| Sbjct 273060 TATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGA-GAGGAGATAT 273110 Score = 105 bits (116), Expect = 1e-17 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | | || || || || ||||| || ||| |||| |||| ||| Sbjct 273337 ATGCAAATGTTTGTGGAAACCCTCACTGGAAAAACCATTACTCTAGAAGTTGAGAGCTC- 273395 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 | | || ||| ||| | || ||| |||||||| |||||||| || | || || || Sbjct 273396 TCACACCATTGACAATGTCAAGGCGAAGATTCAAGAAAAAGAAGGAATCCAACTAGACCA 273455 Query 124658 ACAAAGGCTT-ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||| || ||| || || || || ||||| | |||||| |||| || | | || || | Sbjct 273456 ACAGAGACTTTATCTTCGCTGGCAAACATCTTGAGGATGGTCGCACTCTTGCTGACTACA 273515 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | | || |||||||||||| |||||||||| | | | || |||||||||| Sbjct 273516 ACGTCCAGAAAGAATCAACTCTGCATTTGGTACTTCTTCTAAGAGGTGGTAT 273567 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | ||||| || ||||| || |||||||| | ||| | ||| || | Sbjct 273109 ATGCAGATCTTTGTTAAGACTCTTACAGGGAAGACTATAACACTTGAGGTCGAAAGCTCA 273168 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || || |||||||||||||| || || || || || Sbjct 273169 -GATACCATCGATAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCA 273227 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| ||||| || || ||| | |||||| |||| || | | ||||| || Sbjct 273228 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGTCGTACGCTTGCGGATTACAA 273287 Query 124718 TATTCAAAAAGAATCAACT 124736 || || || || |||||| Sbjct 273288 CATCCAGAAGGAGTCAACT 273306 >seq204 Length=2333866 Score = 116 bits (128), Expect = 6e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || || || ||||| ||||| ||||| || Sbjct 1139135 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCATC 1139194 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| || || ||||| || ||||| || ||||| ||||| Sbjct 1139195 CGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGATCA 1139254 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || || | ||||| | | ||||| || Sbjct 1139255 GCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAA 1139314 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || |||||||||||| | |||||||| | ||| | |||| ||| Sbjct 1139315 CATCCAGAAAGAATCAACTCTTCATTTGGTGCTTCGTCTTAGAGGAGGT 1139363 >seq1208 Length=4595443 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 ||| || ||| | ||||| | ||||||||||| || ||| | ||| ||||| ||| Sbjct 3925581 GCAGATCTTTGTGAAGACGTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGCTCTGA 3925640 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 ||| ||| || | ||| || |||||||| || ||||| || || || || || || Sbjct 3925641 TACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCA 3925700 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 | |||||| |||| || || || |||||||| ||| ||| | | || || || || Sbjct 3925701 GAAGCTTATCTTTGGTGGTAAGCAGCTAGAGGATGGTCACACACTTGCTGACTACAACAT 3925760 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || | |||||||| | ||| | |||||||||| ||| || Sbjct 3925761 CCAAAAAGAGTCCACACTCCATTTGGTGCTTCGTCTCGGAGGTGGTATGCAAATTT 3925816 >seq793 Length=772624 Score = 111 bits (122), Expect = 2e-19 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || ||||| || ||||| || || ||| | ||| |||| ||| Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTC- 610765 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| |||| || || || || ||||||||||| || || || || | Sbjct 610766 TGACACCATCGACAATGTTAAGGCA-AAGATCCAGGATAAAGAAGGCATTCCTCCGGACC 610824 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| | || || || || ||||| |||| ||| | || || || | ||||| | Sbjct 610825 AGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 610884 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| |||||||| || | || |||||| | || ||| |||||||||| Sbjct 610885 ACATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGGTAT 610936 >seq406 Length=3140938 Score = 104 bits (114), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||||| || || ||||| || ||||||||||||||||| ||||| || ||||| || || Sbjct 2970553 GAAAA--CAGGACAAAGAGGGAATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAA 2970496 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 |||| | || ||| |||||||| ||| || || || || || ||||| || ||| | || Sbjct 2970495 ACAACTTGAAGATGGTCGAACACTAGCGGACTACAACATCCAGAAAGAGTCGACTCTTCA 2970436 Query 124742 TTTGGTTTT 124750 |||||| || Sbjct 2970435 TTTGGTCTT 2970427 >seq971 Length=4928269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| ||||||||||| |||||||||||||| || ||||| || || ||| | Sbjct 3107589 CAGGACAAAGAGGGTATACCACCCGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTC 3107530 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| |||| ||||| || || || ||||| || ||| | ||| | || Sbjct 3107529 GAAGATGGCCGAACCTTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTC 3107470 Query 124749 TT 124750 || Sbjct 3107469 TT 3107468 >seq1177 Length=2734319 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || |||||||| || || || || ||| | ||| | || ||| Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || ||| |||| || || || || || || ||||| || || || || | Sbjct 987787 -GACACCATCGACAATGTTAAGGCA-AAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 987844 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| | || || || || ||||| |||| ||| | || || || | ||||| | Sbjct 987845 AGCAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACA 987904 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||||||||| | || |||||| | || ||| |||||||||| Sbjct 987905 ACATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGGTTAAGAGGTGGTAT 987956 >seq1810 Length=8348134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| |||||||| | ||||||||| ||||| | |||||||||||||||| | Sbjct 6693797 GCAATGTTAAACGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAA 6693856 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| ||| ||| |||| || || || || | |||| Sbjct 6693857 AGTTCTCCATTTGCA---ACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATC 6693913 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTAT-ATTTCTAGAT--TCAGGttta 205659 | || ||| ||||||||| || | | ||||| ||| | ||| ||||| ||| Sbjct 6693914 AACTTAAGATCAGGAGGATTCCAAGCCG---ACATTATGATTCGTCGATCATCAGGATTA 6693970 Query 205660 ttttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTA 205719 || || || || || || | || | | |||||||||||||| ||||||| | | Sbjct 6693971 TTCTTGATCTTGTTAATTACATCTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 6694030 Query 205720 TCCATATC 205727 | |||||| Sbjct 6694031 TGCATATC 6694038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755437642419200