Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1396 145 7e-30 seq1177 129 5e-25 seq793 125 6e-24 seq1208 109 5e-19 seq236 98.7 9e-16 seq1328 86.0 5e-12 seq204 86.0 5e-12 >seq1396 Length=1446835 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||||||| | || ||||| || || ||||| || || Sbjct 400833 TACCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAG 400774 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| |||||| |||||||| |||||| |||||||||||||||| || |||| Sbjct 400773 CCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAG 400714 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || || || || | || | |||||| | |||||| | Sbjct 400713 GAATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCA 400654 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | ||| | |||||||| |||| ||| || || || ||||||||| Sbjct 400653 CCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 400604 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || || || ||||| |||||||| || || || |||||| Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| || | ||||||||| ||||| ||||||||||||||| Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || |||||| | |||| ||||| | ||| || ||||||| ||| | || || Sbjct 399781 ATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTT 399722 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || |||||||| Sbjct 399721 CCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || |||||||| || || ||||| |||||| Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||||||| |||||||||||||||| || ||||| || || |||||||| Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||| ||||| | || | || || Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| || || ||||||||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| |||||||| | ||||||||| || ||||||||||| || Sbjct 400377 TACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAG 400318 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| | || || || ||||||||||| |||| | | |||||| || || | Sbjct 400317 CCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTG 400258 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| |||||| ||| || | |||| |||||| | |||||| | Sbjct 400257 GAATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCA 400198 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || |||| || || || ||||| ||||| Sbjct 400197 CCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || |||||||| || ||||||||||| || || || ||| Sbjct 400589 CAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATC 400530 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||| ||||| || |||| | | |||||| || ||||| || || ||||| || Sbjct 400529 CTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATC 400470 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| |||||| | |||||| ||||| | ||| | || Sbjct 400469 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGT 400410 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || ||||||||||| Sbjct 400409 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 |||||||| || ||||| ||| |||| | | |||||||| || || || ||||||||| Sbjct 400075 TCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTG 400016 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || |||||| | |||| ||||| | ||| || ||||||| ||| | Sbjct 400015 TCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATA 399956 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| ||||| Sbjct 399955 GTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 >seq1177 Length=2734319 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || ||||| || |||||||||||| || ||||| ||| || Sbjct 987935 ACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCT 987876 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||| | | ||||| || ||||| ||||| |||||||| Sbjct 987875 AGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 987816 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | |||| |||||| | |||||||||||| | || | || || Sbjct 987815 ATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTA 987756 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| ||||| Sbjct 987755 CCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || ||||| ||||||||||||||| || || || ||| || Sbjct 610915 ACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCT 610856 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||| | | ||||| || ||||| ||||| || || || Sbjct 610855 AGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGG 610796 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | |||| |||||| | |||||| ||||||| || | || ||| Sbjct 610795 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTG 610736 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| ||||| Sbjct 610735 CCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1208 Length=4595443 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| ||| ||||||||||| |||||||| || | ||| | |||||| Sbjct 3925788 CACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCCTC 3925729 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||| | |||| || |||||| || ||||| || || ||||||||| Sbjct 3925728 TAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 3925669 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || |||||| | || | || || | ||| || ||||| | || | ||||| Sbjct 3925668 AATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTTTT 3925609 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||| |||| || || ||||| |||||| Sbjct 3925608 GCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 105 bits (116), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGT--ATC 118585 |||||| |||| |||||||| ||||| ||||||||||| || |||| |||| ||| Sbjct 3926016 CACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCG---AGTGTGCGTCCATC 3925960 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || || | ||||||| | |||||| || || || || ||||||||||| Sbjct 3925959 TTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC 3925900 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| ||||| | || ||| ||||| | || | || Sbjct 3925899 CTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGT 3925840 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || |||||||| ||||| Sbjct 3925839 CTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || || || || ||||||||||| || || || ||| || Sbjct 3925559 ACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCTTCC 3925500 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||| | | ||||| || |||| ||| | |||||||| | Sbjct 3925499 AGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGA 3925440 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | |||| || || | |||||| | ||||| || | || ||| Sbjct 3925439 ATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTCTTG 3925380 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| ||||| Sbjct 3925379 CCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 >seq236 Length=1640546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| | |||||| || ||||||||||| || Sbjct 1089231 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCG 1089172 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | |||||||| || || || || || ||||||||| || || ||| Sbjct 1089171 GCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTC 1089112 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || || || || ||| Sbjct 1089111 ACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 1089052 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 1089051 TTCACGAAGATCTGCAT 1089035 >seq1328 Length=1576597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| | || || ||||||||| || || || Sbjct 273305 GTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGTTGCTTACCG 273246 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || ||||| || || || || ||| || || || Sbjct 273245 GCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTG 273186 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| |||||||| | || | || || || || ||||| Sbjct 273185 ACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCTGTAAGAGTC 273126 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 273125 TTAACAAAGATCTGCAT 273109 >seq204 Length=2333866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || ||||| || |||||||||||| | || | || || Sbjct 1139345 CACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTC 1139286 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||||| ||| |||| | ||| |||||||| || || || || ||||||||| Sbjct 1139285 CAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 1139226 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||| || | |||| ||||| | || | || ||||| | ||| | || | Sbjct 1139225 GATCTTGGCTTTCACATTGTCGATTGTGTCGGATGAT-TCAACCTCTAGGGTTATTGTCT 1139167 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||| || || |||||||| Sbjct 1139166 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820121473248