Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1396 113 5e-20 seq1328 111 2e-19 seq1208 100 3e-16 seq793 98.7 1e-15 seq1125 86.0 7e-12 seq1202 82.4 9e-11 seq236 82.4 9e-11 >seq1396 Length=1446835 Score = 113 bits (124), Expect = 5e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||| ||||||||||||||||||| || || | || ||| Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || || | |||||| || | || | || |||||||| | || Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGT-CTTG 399783 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | || | || | ||| | | | ||||| ||| |||||| |||| ||||| || Sbjct 399782 GATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCT---TTCCACCTCGAGGGTGATAGT 399726 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || ||||| ||||| Sbjct 399725 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| |||||||| || || |||| || ||||| || |||||||| Sbjct 401023 TCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAG 400964 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 400963 ATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTT 400905 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| ||||| || | |||||||| || || |||| ||||| Sbjct 400904 GTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTT 400848 Query 43169 TACAAAGATTTGCAT 43183 || || || ||||| Sbjct 400847 CACGAAAATCTGCAT 400833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| || || || || ||||||| ||| || | || || Sbjct 400814 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTC 400755 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || |||||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 400754 AAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 400695 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 ||| || || | ||| | | | ||||| |||| ||||| || | ||||| | Sbjct 400694 GATCTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATAG 400639 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || | ||||| || ||||| ||||| Sbjct 400638 TTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 >seq1328 Length=1576597 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 42958 CTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCA 43017 ||||||| || | | ||||| || | || ||||||||||||||||| |||||||| Sbjct 273106 CTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCA 273047 Query 43018 GAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCA 43077 ||| || | || || ||||| ||||| || || || |||| ||||||||| | || | Sbjct 273046 AAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGA 272987 Query 43078 CGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACAT 43137 | ||||| || ||| ||| || | | | | |||||| ||| || | Sbjct 272986 TTCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCT 272927 Query 43138 CGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | | || ||||| |||||||| || |||||||||||||||||||| Sbjct 272926 CAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1208 Length=4595443 Score = 100 bits (110), Expect = 3e-16 Identities = 162/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||||||||| | |||| ||| ||||| || ||||| ||||| Sbjct 3925805 CCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCA 3925746 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || ||||||||||||||| | || || || ||||||||| | || Sbjct 3925745 AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGG 3925686 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||| | ||| | || | || | ||| | | | || || ||| ||| Sbjct 3925685 ATTCCTTCCTTGT-CTTGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCT---TTC 3925630 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 || || | |||||||||||||| || | |||||| |||||||| ||| Sbjct 3925629 AACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||||||||| | || ||||||||| || ||||||||||| Sbjct 3926033 CCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCG 3925974 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||| | || ||||||| ||||||||| | || Sbjct 3925973 AGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGG 3925914 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| || || |||| | | | ||||| || | || Sbjct 3925913 ATCCCCTCCTTGTCCTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCC---TCA 3925857 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 3925856 ACCTCCAAAGTAATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| ||||| ||||| | |||| || ||||||||||| || || Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | |||||||| | || | | ||||||||| ||| ||| ||||| ||| Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGA-CGTT 611007 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | || || |||| || || || | || ||||| ||||| || || ||||| Sbjct 611006 GTCAATAGTATCAGAGCTC---TCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTT 610950 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 610949 GACAAAGATCTGCAT 610935 >seq1125 Length=2998257 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || | || || |||| || |||||||| || ||||| Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 292904 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || |||| ||||| || || |||||||| || || || Sbjct 292905 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 292964 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 292965 AAGATCTGCATCTTT 292979 >seq1202 Length=5651650 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1760989 AAAAATATTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1761048 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 1761049 TTACCACTATACTAC 1761063 >seq236 Length=1640546 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || ||||| || |||| || ||||| || || ||||| Sbjct 1089225 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 1089166 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | | |||||||| ||| || ||| | | Sbjct 1089165 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 1089106 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 1089105 TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 1089046 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 1089045 AAGATCTGCATCTTT 1089031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803704832320