Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq608 100 4e-16 seq204 95.1 2e-14 >seq608 Length=2187891 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 |||| ||||| ||| || ||| | || || ||||||| ||| ||| || | | | Sbjct 1512824 TTCCCGAAGGAACTTACGCGAGAATCGCACCGAGATCTGGTTTGGCTTGGAAACATTCGA 1512883 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| ||||||||||||| ||||| | ||||| |||||| ||| || || || || | Sbjct 1512884 TTGATGTTGGAGCTGGAGTGATTGATGCTGATTACAGAGGACCTGTTGGTGTGATTTTGT 1512943 Query 10549 TTAATCATTCTAATGAAGATTTT-ATAATAAATAGAGGAGATAGAATATCTCAATTAAT 10606 ||||||||||| ||| |||||| || || | | |||||| |||| | ||||| || Sbjct 1512944 TTAATCATTCTGATGTTGATTTTGATGTCAAGTTG-GGAGATCGAATCGCGCAATTGAT 1513001 >seq204 Length=2333866 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | |||||||| | ||| |||||||| || || ||||| | Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || ||||||||||| || || || || | |||||||||||| || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 1139242 ATTCCTTCCTTGTCTTG 1139226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743508332308480