Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq236 91.5 1e-13 seq1396 87.8 1e-12 seq1125 87.8 1e-12 >seq236 Length=1640546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | ||| || || ||||| Sbjct 1089226 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAA 1089167 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | ||||||||||| || | | |||||||| ||| || ||||| | || Sbjct 1089166 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTCACAT 1089108 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | || ||||| || | || ||||| || || || || ||||||| Sbjct 1089107 TGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCA 1089048 Query 34377 CAAAGATCTGCATC 34390 | |||||||||||| Sbjct 1089047 CGAAGATCTGCATC 1089034 >seq1396 Length=1446835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| || | || ||| ||||| || ||||| || | | Sbjct 399919 CCACCACGGAGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 399860 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | |||| | || || | |||||| || ||||| || |||| |||||| || || Sbjct 399859 AACGTACGGCCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGA 399800 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338 | || ||||||||| ||||| |||||| | | |||| | ||| || ||| Sbjct 399799 ATGCCCTCCTTGTCTTGGATCTTG-GCTTTAAC---GTTGTCGATTGTGTCAGAGCTTTC 399744 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 399743 CACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 399692 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || |||| ||| | || ||| ||||| ||||||||||| Sbjct 401063 GAAACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTC 401004 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--G 34276 | ||| || |||| || | ||| || || ||||| ||||| ||||||||||| | Sbjct 401003 AGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGG 400944 Query 34277 ACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGAT 34336 | || || || |||||||| ||||| ||| | | | | || | |||| Sbjct 400943 AGGGATAC-CT-TCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTC 400886 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| |||||||| || ||||| | ||| ||||| || |||||||| Sbjct 400885 TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 >seq1125 Length=2998257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| | || |||| || | |||||| || ||||| Sbjct 292784 TTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 292843 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 292844 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 292903 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || ||||| || | ||||| || || || || || |||||||| Sbjct 292904 GTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 292963 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 292964 GAAGATCTGCATC 292976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064345616640