Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1396 116 3e-21 seq1125 98.7 8e-16 seq793 86.0 5e-12 seq1328 84.2 2e-11 seq1208 84.2 2e-11 >seq1396 Length=1446835 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| ||||||||||| |||| |||| |||| || Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| || || ||||| Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | ||||||||| || || ||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGT 45182 || |||||||| || || ||||||||||||||||||||| || ||| | ||| Sbjct 400360 AAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTT--CTGCCGT 400303 Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 | || ||||||||||| || || ||||| | ||| ||||| || || | ||||||||||| Sbjct 400302 CTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGT 400243 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || |||||| || || | | | |||| | ||||||||||| || || | Sbjct 400242 CCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGG 400183 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || |||| ||||| || || |||||||| Sbjct 400182 TCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 |||| |||||||| || || ||||||||| ||||| ||||| || |||| | Sbjct 400819 CTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCA 400760 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || ||||| || ||||| || | ||||| ||||| ||||| | ||| |||||| Sbjct 400759 TCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTG 400700 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| | ||||||||||| ||| || Sbjct 400699 TCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATA 400640 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||| |||||| || ||||| |||||| Sbjct 400639 GTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 400604 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||| ||||| |||||||| || || ||| | || Sbjct 400588 AAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCC 400529 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || |||||||| || ||||||| ||| ||||| ||||| | || ||||| ||| Sbjct 400528 TCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCC 400469 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| | ||||||||||| ||| || ||| Sbjct 400468 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTC 400409 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| || || || ||||| Sbjct 400408 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq1125 Length=2998257 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTCGTCCAGTT 45191 ||| ||||| |||||||| |||||||||||| | || | || |||| || || | Sbjct 292772 GTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTT-CGTCCGTCTTCGAGCT 292830 Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 | ||||||||||| ||||| ||||| ||||| || || | || ||||||||| || | Sbjct 292831 GCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCT 292890 Query 45252 TTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||| || | | | |||| | ||| ||||| | ||| || ||||| |||| Sbjct 292891 TGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCG 292950 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || ||||| ||||| ||||| || Sbjct 292951 TTAGGGTTTTCACGAAGATCTGCATCTT 292978 >seq793 Length=772624 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| || | | |||||||| || || || |||||||||||||| ||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || || ||||| |||||||| || || | || ||||| ||||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || ||| |||||| | | | |||| | ||| ||| Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || || || ||||| || |||||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1328 Length=1576597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 45113 CCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT 45172 |||||||| || | |||||||| || || |||||| ||||| |||| || || Sbjct 273104 CCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAA 273045 Query 45173 TGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACA 45232 || | || || || ||||| ||||| || || | | ||| ||||| ||||| | Sbjct 273044 GTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATT 272985 Query 45233 CCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCC 45292 || ||||| || || ||| |||||| | | |||| | || ||||| Sbjct 272984 CCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCA 272925 Query 45293 ACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || ||||||||||| |||||||| |||||||||||||| Sbjct 272924 AGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1208 Length=4595443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || |||||||| || ||| ||| | || || Sbjct 3926015 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTCG 3925956 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||| || || | | ||| ||||| || || | |||||||||||| || Sbjct 3925955 AGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTCA 3925896 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||||| ||||||| ||||| ||||| Sbjct 3925895 ATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTTT 3925836 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | ||||||||||| |||||||| Sbjct 3925835 CCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065839680824