Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1208 95.1 9e-15 seq1396 89.7 4e-13 seq1177 89.7 4e-13 seq793 89.7 4e-13 seq204 89.7 4e-13 >seq1208 Length=4595443 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || |||||||| || || |||||||| || |||| || ||||||| Sbjct 3925562 AGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCT 3925503 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || || |||| | |||||| || ||| || | | ||||||| || Sbjct 3925502 TCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCC 3925443 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | ||| || | | | ||| ||| | ||| | || | || ||| | Sbjct 3925442 TGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTC 3925383 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || ||||||||||| Sbjct 3925382 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 >seq1396 Length=1446835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | |||| ||||||||| || || || |||||||||||||| ||| Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | |||||| || ||| |||| | ||| || || ||| || Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||||| | || ||||| | | | ||||| | ||| Sbjct 400255 ATACCCTCCTTGTCCTGAATTT-TAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 400197 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || ||||| || || || ||||||||||| Sbjct 400196 CTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 >seq1177 Length=2734319 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| || |||||||| ||||||| || | |||| Sbjct 987938 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 987879 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | |||||| || ||| || | ||||||||| || Sbjct 987878 TCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 987819 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | ||| || | | | ||||| | |||| |||| |||||| | Sbjct 987818 TGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTC 987759 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | |||||| || ||||||||||| Sbjct 987758 TTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| ||||||||||| ||||||| || | |||| Sbjct 610918 AGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCT 610859 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | |||||| || ||| || | |||||| ||||| Sbjct 610858 TCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCC 610799 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | ||| || | | | |||||| | ||| || | |||||| | Sbjct 610798 TGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 610739 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || ||||||||||| Sbjct 610738 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq204 Length=2333866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || | ||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||||||||||| || || |||| | | ||| |||||| || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 1139242 ATTCCTTCCTTGTC 1139229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335012392280