Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1639 226 3e-54 seq204 123 2e-23 seq1396 113 4e-20 seq793 98.7 9e-16 seq1125 89.7 5e-13 seq236 87.8 2e-12 seq1328 84.2 2e-11 seq1177 84.2 2e-11 >seq1639 Length=5101707 Score = 226 bits (250), Expect = 3e-54 Identities = 595/893 (67%), Gaps = 30/893 (3%) Strand=Plus/Minus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| ||||| || || | || ||||| || ||| | |||||||| || || || Sbjct 2280337 AGATTCTGT-ATGTTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGA 2280279 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 ||||||||| ||||||| ||||||||||| || || | || |||||||||| Sbjct 2280278 AGCATCGTTCTGGACCGCTGAAGAAGTAGATCTATCACAAGACAATCGCGATTGGGAGAA 2280219 Query 57656 C---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 | ||||| || ||| | | || || |||||||| | || || ||||||||||| Sbjct 2280218 CAATCTCAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATC 2280159 Query 57713 CGATGGTAT--TGTTAACGAGAATTTGG----TCGAAAGATTTTCACAAGAAGTGCAAGT 57766 || || || ||||| |||||| | | |||| || | | || || ||||| Sbjct 2280158 TGACGGAATCGTGTTA--GAGAATCTCGCTTCTCGATTCATGTCC----GATGTTCAAGT 2280105 Query 57767 GACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 |||||||| | |||||| || || || || | || ||||||||| | || || || | Sbjct 2280104 CTCGGAGGCGCG-TGCTTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGA 2280046 Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCA 57885 ||||| || || |||||||||| | || || ||| | |||| | | || || Sbjct 2280045 TGTATAGTCTCCTTCTCGATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTC 2279986 Query 57886 ACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 |||||| ||||| || || ||| |||| ||||| || ||||| | || |||||||| Sbjct 2279985 GCGCGATTGAAACGATTCCTTGCG-TCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC 2279927 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 | || | || ||||| || | | | || ||||| || ||||| || Sbjct 2279926 GA---CGGATCTCAAACCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATC 2279870 Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064 ||||| || || |||||| | || || ||| | |||||||| || || ||||| || Sbjct 2279869 TTCTTCTCTGGAAGCTTTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGG 2279810 Query 58065 CTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124 | || || ||||| ||||| || || ||||| || | || ||||| || ||| Sbjct 2279809 TTAACTTTCTCAAACGAATTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCTTGC 2279750 Query 58125 CTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACC 58184 || | ||| | | | | | || | || || || ||| | || | Sbjct 2279749 TTACTCTACACACTCCTCAAAACAAAGCTGAGTGAAGAACGTATCAAGTCAATCGTTTGT 2279690 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || ||||||| ||| || | |||||||| ||| || || ||| || || | ||| Sbjct 2279689 GATGCGGTCGAGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGT 2279630 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304 |||||| |||||||||| |||| |||||||||||||| || || |||||| | Sbjct 2279629 ATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTG--GGTG 2279572 Query 58305 CTGATTGGAGAGCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATC 58361 || |||| | || | ||| ||| ||||| ||||||| ||| | || ||| Sbjct 2279571 CT-CTTGGGTACGGTAAGGTGTACGGTGCGACTAATCCCTTTGATTGGATGGAACTAATC 2279513 Query 58362 TCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || || |||| || || ||||||||||| ||| ||| | || || ||||| Sbjct 2279512 TCTCTTCAGGGGAAAACCAACTTTTTCGAGAAACGTGTTGGTGATTACCAAAA 2279460 >seq204 Length=2333866 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || || ||| | || |||||| Sbjct 1139131 CAAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAAT 1139190 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | || ||| | || ||||||||||| | || || | Sbjct 1139191 CATCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 1139250 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||| ||| |||| ||||| || ||||| ||||||||| | || | ||||| Sbjct 1139251 ATCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATT 1139310 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | ||||| || |||||||| ||||||||| |||| ||| | || || || ||| Sbjct 1139311 ACAACATCCAGAAAGAATCAACTCTTCATTTGGTGCTTCGTCTTAGAGGAGGT 1139363 >seq1396 Length=1446835 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| |||||||| |||||| | || || || || Sbjct 400604 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACCTTGGAGGTGGAGAGCTC 400663 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 400664 TGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 400723 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||||||| | || || | ||| || || ||||| Sbjct 400724 GCAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTATAA 400783 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| ||||| |||| || || || | || |||| Sbjct 400784 CATCCAGAAGGAGTCGACCCTTCACTTGGTGCTAAGGCTTCGTGGTGGTA 400833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| | || || || || ||||| | || || || ||| Sbjct 400833 ATGCAGATTTTCGTGAAGACTTTAACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCC 400892 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||||||| | || || |||||| Sbjct 400893 GACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 400952 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| |||||| | || ||| | || || || || ||| Sbjct 400953 CAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGTCGCACACTGGCTGACTACAAC 401012 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| ||||| |||| || Sbjct 401013 ATCCAGAAGGAATCGACCCTTCACTTGGTCCT 401044 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || ||||| | || || || ||| Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||| || | || || |||||| Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||| | |||||| | ||| || || || ||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || ||||| |||| Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGT 400357 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || ||||| |||| ||||| || Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| || | | | || || || ||| || |||||| | || || ||||| Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAG-ATCCAGGATAAAGAAGGCATTCCTCCGGACCA 610825 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | |||| ||||| || |||||| | ||||| || || |||||| || Sbjct 610826 GCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAA 610885 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||||||||| || || |||| || Sbjct 610886 CATTCAGAAAGAATCGACCCTCCACTTGGTTCT 610918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || || || | || ||||| || Sbjct 610935 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 610994 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | |||||| || || || |||||||||||| | || || ||||| Sbjct 610995 GATACTATTGACAACGTCAAAGCAAAG-ATCCAGGACAAGGAAGGAATCCCTCCGGACCA 611053 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || || || ||| | |||||| | ||| | || || || Sbjct 611054 GCAAAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAA 611113 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| |||||||| ||||| || || ||| | || | || |||| Sbjct 611114 CATCCAAAAGGAATCGACCCTTCACCTTGTCCTTCGTCTTCGTGGTGGTA 611163 >seq1125 Length=2998257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || || || |||||| |||| || || | Sbjct 292979 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTC 292920 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || |||||||||||| | || || || Sbjct 292919 TTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGA 292860 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATT 31367 ||||||||| | || ||||| || || ||| | |||||| | || | || ||| | Sbjct 292859 CCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGAC-GGACGAACCTTAGCCGACT 292801 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || || ||||| || ||||| || || ||| Sbjct 292800 ACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTT 292763 >seq236 Length=1640546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || || || || ||| | || || || | Sbjct 1089031 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAGTC 1089090 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || ||| || || ||||||||||| | || || || Sbjct 1089091 CTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1089150 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| | || ||||| || |||||| | |||||| ||| | ||| || Sbjct 1089151 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGCACTCTCGCCGACTA 1089210 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || |||||||| || || Sbjct 1089211 CAACATCCAGAAGGAATCAACGCTTCATCTCGTCCT 1089246 >seq1328 Length=1576597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||||||||| || ||||| || || || | || |||||| ||| Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTCC 272940 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || || | | | || || || || |||||||| | || || ||||| Sbjct 272941 GACACAATTGACAATGTTAAGGCAAAG-ATCCAAGATAAGGAAGGAATCCCTCCGGACCA 272999 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || |||||| | ||||| ||| || ||| | || Sbjct 273000 GCAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACAA 273059 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGG 31416 |||||||| || || || || || |||| ||||| |||| || Sbjct 273060 TATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGAGAGG 273104 >seq1177 Length=2734319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || || || ||||| | || || || ||| Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | ||||||||||||| | || || ||||| Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGACCA 987845 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || ||||| || |||||| | ||||| || || |||||| || Sbjct 987846 GCAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAA 987905 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||||||| || || || |||| || Sbjct 987906 CATCCAGAAAGAATCAACCCTCCACTTGGTTCT 987938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755567876480