Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1639 181 1e-40 >seq1639 Length=5101707 Score = 181 bits (200), Expect = 1e-40 Identities = 416/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Plus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 || || |||||||||||||| | || ||||||| || |||||||| || || || Sbjct 2279748 AAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTT 2279807 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAA 33697 | || ||||| || || || || |||||||| || ||||| || || | | || || || Sbjct 2279808 AACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAA 2279866 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT- 33756 |||||| ||||| || ||| || || | || || || | | | || || Sbjct 2279867 GAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATC 2279922 Query 33757 -GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || ||||| || ||||| | || ||||| || ||||| |||||||| || | Sbjct 2279923 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||| |||| | | | || || ||||||| | ||| ||||||| | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || |||||||||||||| || ||||| || || |||||| | ||||| | Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCG 2280102 Query 33934 TAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | || || || | ||| ||||| || | ||| || ||| ||||| ||| Sbjct 2280103 AGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGAT 2280161 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTT 34048 || || || || || | || ||||| || || | || |||| | | | | | || Sbjct 2280162 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTG-TT 2280220 Query 34049 ATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 | |||||| |||| |||| |||| ||| |||||||| | ||||| || ||||| Sbjct 2280221 CTCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGC 2280277 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 || || || || ||||| | |||||| || | || ||||||||||| ||| ||||| Sbjct 2280278 TTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCT 2280337 Query 34166 ATTTGGATTTGGTG 34179 | ||| |||||| Sbjct 2280338 GTCTGGGGTTGGTG 2280351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802295432320