Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1604 105 6e-18 >seq1604 Length=1253100 Score = 105 bits (116), Expect = 6e-18 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||| ||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 403257 TTGAGGCCTTGGCGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 403316 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| |||| | ||| |||||| | |||||| || | || Sbjct 403317 AGACATCAAATGGTAAGTTTGTATTGCGGAATCAATATCATCCTTGTGAATGCCAACAGC 403376 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 ||||||||| ||||| ||||| || ||||| | | ||| || || |||||| || Sbjct 403377 TACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTTTCCCTTGGACT-TTTAAG-AGG 403434 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| | || | ||||| | |||||| || |||| | |||| | ||| || Sbjct 403435 TATGATCTCTCAAGAGTTTTAAATCCAAAGAAATCATATTCAAAATCACGATCATA 403490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513414847360