Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1639 154 2e-32 seq1604 95.1 2e-14 >seq1639 Length=5101707 Score = 154 bits (170), Expect = 2e-32 Identities = 403/602 (67%), Gaps = 27/602 (4%) Strand=Plus/Plus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 || || |||||||||||||||| || ||||||| || |||||||| || || || Sbjct 2279748 AAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTT 2279807 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAA 36273 | || ||||| || || || || |||||||| || ||||| ||||| | | ||||| || Sbjct 2279808 AACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAA 2279866 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT- 36332 ||| || ||||| || || || || | || || || | | | || || Sbjct 2279867 GAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATC 2279922 Query 36333 -GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 || ||||| || ||||| | || ||||| || ||||| || || || || | Sbjct 2279923 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||| |||| | | | || || ||||||| | ||| ||||| | | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || |||||||||||||| || || || || || |||||| | ||||| | Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCG 2280102 Query 36510 TAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || || || | ||| ||||| || | ||| || ||| ||||||||| Sbjct 2280103 AGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGAT 2280161 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGT 36622 || || || || || | || ||||| || || | | || ||||| | | | | Sbjct 2280162 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTT--GAGATTG- 2280218 Query 36623 TTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || | |||||| |||| |||| |||| ||| |||||||| | ||||| || ||| Sbjct 2280219 TTCTCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGAT 2280275 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || || || || || ||||| | |||||| || | || || ||||| || ||| ||| Sbjct 2280276 GCTTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAAT 2280335 Query 36740 CT 36741 || Sbjct 2280336 CT 2280337 >seq1604 Length=1253100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | || | ||| || | || | || | || |||||||| |||||| Sbjct 402929 TCCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACC 402988 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || |||||| |||||||||||||| | ||| Sbjct 402989 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGA 403048 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 403049 AACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 403108 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 |||||| || |||||||| ||||| | ||||| ||||| Sbjct 403109 GCCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156806400960