Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1810 87.8 2e-12 >seq1810 Length=8348134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| ||| ||||||||||| || ||||| Sbjct 6693760 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAG 6693819 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 6693820 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 6693879 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| | || || | || ||||| || Sbjct 6693880 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGGAGGATTCCAAGC 6693939 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | ||| || ||||| Sbjct 6693940 CGACATTATGATTCGTCGATC 6693960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765864917120