Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1639 206 4e-48 seq1604 96.9 5e-15 >seq1639 Length=5101707 Score = 206 bits (228), Expect = 4e-48 Identities = 602/906 (66%), Gaps = 31/906 (3%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||||| |||||||| |||||||| || ||||| || | | || || | Sbjct 2279460 TTTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGT 2279519 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| ||||| || || || | || | ||||| || | | Sbjct 2279520 TCCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTA-CCCAAG--AGCACCC 2279576 Query 49789 AAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT- 49844 || |||||||| ||||| || ||||| |||||| |||| ||||| || | Sbjct 2279577 AAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACC 2279636 Query 49845 AAGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 49902 || || ||||| || |||| | ||| ||| ||||| |||||||| Sbjct 2279637 AACGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCAATCTCGACCGCATCACAA 2279693 Query 49903 ATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAAC 49960 | || || | | |||||||||| | | | | | | ||| || | || | Sbjct 2279694 ACGATTGACTTGATACGTTCTTCACTCAGCTTTGTTTTGAGGAGTGTGTAGAGT--AAGC 2279751 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 | |||||||||||||| | || ||||||| || | |||||| || || || | | Sbjct 2279752 AAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACC 2279811 Query 50021 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAG 50079 | ||||| || || || || |||||||| || ||||| ||||| | ||||| |||||| Sbjct 2279812 CAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAAGAAG 2279870 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTAT 50138 || ||||| || || || || |||| || || | | | | | | | | || Sbjct 2279871 ATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATC-CGTCGAT 2279929 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| || ||||| | || ||||| || ||||| |||||||| || || ||| Sbjct 2279930 CCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAA 2279989 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 |||| | | | || || ||||||| | ||| ||||||| | ||||||||||| || Sbjct 2279990 TAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTC 2280049 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || |||||||||||||| || ||||| || || |||||| | ||||| | | || Sbjct 2280050 GGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGACTTG 2280109 Query 50319 CACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 || || | ||| ||||| ||| | ||| || ||| ||||||||| || || | Sbjct 2280110 AACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGCGA 2280168 Query 50378 AAAACGCCAATACATGTTTTATAAAATG--TTTTTCGTTGGGTGTTAGT-TTATTCCAAT 50434 | || || | || ||||| || || || || | | | || | | || | ||||| Sbjct 2280169 AGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTCTCCCAAT 2280228 Query 50435 C---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | |||| |||| |||| |||||||||||| | ||||| || ||||| || || | Sbjct 2280229 CGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCTTCGGCTT 2280285 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 | || ||||| | |||||| || | || ||||||||||| ||| ||||| | ||| Sbjct 2280286 TCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGG 2280345 Query 50552 TTGGTG 50557 |||||| Sbjct 2280346 TTGGTG 2280351 >seq1604 Length=1253100 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/255 (69%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 80062 AAGTATATGGCCATAACT-CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 80120 ||||||||| ||| | ||| || ||| |||||| || || | || | ||| || Sbjct 402896 AAGTATATGCTGATATGTACCCTTTCTCTTGCCTCCTCCTTGGTCAACATAACGAGCAGT 402955 Query 80121 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 80180 | || | || | || |||||||| ||||||||| ||||| ||||| || || || Sbjct 402956 ATCGTTGAATACACGCAGCATTGGAACAATACCATTAGATGTTCCATTTGTGCCACGAAT 403015 Query 80181 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 80240 || |||||| | |||||||||||| | ||| | ||| || || || || ||| Sbjct 403016 GTAACTTCCAGTTGCACGAATATTATGAGCTGAAACACCAATACCACCAGCAGATTTGCT 403075 Query 80241 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTT 80300 || | || || ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 403076 AATAACAGCACACTCTTTGAGTGTTTCATATATGCCCTCAATGCTATCATCTTTCATGCA 403135 Query 80301 AAGTAGAAAACAGCT 80315 | ||||| ||||| Sbjct 403136 CACCAGAAAGCAGCT 403150 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||||||||| || ||||| | ||||| ||||| ||||| ||||||||||| | | | || Sbjct 401637 GAGAATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTATGACGCATGTT 401696 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| || ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 401697 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 401753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251346068160