Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1639 132 5e-26 >seq1639 Length=5101707 Score = 132 bits (146), Expect = 5e-26 Identities = 377/569 (66%), Gaps = 14/569 (2%) Strand=Plus/Plus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| || || ||||| || || | ||| || |||| || | ||||||||| || || Sbjct 2279747 TAAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGT 2279806 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC-CCGGAAA 13986 ||| || ||||| | |||||||| || | ||| || || | |||||| | || || | Sbjct 2279807 TAACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGG-AGCAAAAGCTTCCAGAGA 2279865 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 |||| || || ||||| ||| || |||| | |||||| | ||| | ||| | Sbjct 2279866 AGAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTC----AGCGAAGGTTTGAGAT 2279921 Query 14047 TCGAT-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || |||||||| | ||||| | || ||| || | || || |||||||| Sbjct 2279922 CCGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATC 2279981 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || ||||| || || ||||||| || | || || ||||| | ||| | ||| Sbjct 2279982 GCGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTA 2280041 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC 14224 ||||| || ||||| |||||||| || || ||||| |||||||| |||||| | || || Sbjct 2280042 TACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCA-CGCGCCTC 2280100 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 ||| ||| || || || |||| || | ||| || || || || ||| Sbjct 2280101 CGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGA 2280160 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 || || || || || | | || ||| || |||| | || | | |||||| || || Sbjct 2280161 TGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTT 2280220 Query 14345 C---CAATCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | |||||| ||| || | || ||||||||||| ||| | ||||| || || Sbjct 2280221 CTCCCAATCGCGATTG-TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCTT 2280279 Query 14401 CAGCTTTTTTATACATTACCCATATTTCT 14429 | ||||| || ||||| |||| || ||| Sbjct 2280280 CGGCTTTCTTGTACATCTCCCAGATCTCT 2280308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716342609600