Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq204 100 2e-16 seq236 89.7 4e-13 seq1328 87.8 1e-12 seq1125 84.2 2e-11 >seq204 Length=2333866 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | ||| || || || | |||||||||| | ||| | | |||| || Sbjct 1139345 CACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTC 1139286 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| ||||| || || || || || ||||| | || | ||||| || || Sbjct 1139285 CAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 1139226 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| |||| || || | | ||||||| | || || |||| ||||| || || Sbjct 1139225 GATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTT 1139166 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAtttt 43112 || ||||| |||||||| || || |||||||| Sbjct 1139165 CCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq236 Length=1640546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| | || || |||| || | ||||| ||||| ||| Sbjct 1089225 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 1089166 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | ||||| || || |||| | |||| || || Sbjct 1089165 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 1089106 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | |||||| |||| ||||| || || || ||||| |||||||| Sbjct 1089105 TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 1089046 Query 43099 AAAATTTGCAtttt 43112 || || ||||| || Sbjct 1089045 AAGATCTGCATCTT 1089032 >seq1328 Length=1576597 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || ||||||||| | ||||| ||| | ||| ||||| | || || Sbjct 273089 ACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCATCTTCA 273030 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||||||||| | || ||| || || | || | ||||| || || | Sbjct 273029 AGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGG 272970 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | || || || ||| ||||||| ||| || || || | ||||| || || Sbjct 272969 ATCTTTGCCTTAACATTGTCAATTGTGTCG-GAGCTTTCAACCTCAAGAGTTATGGTCTT 272911 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAt 43109 || || ||||| || ||||| |||||||| Sbjct 272910 GCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1125 Length=2998257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| || || ||| |||| || | || || ||||| ||| Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | ||||| || || |||| | ||||| || Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 292904 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| || |||||| || | || || || || || ||||| |||||||| Sbjct 292905 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 292964 Query 43099 AAAATTTGCAtttt 43112 || || ||||| || Sbjct 292965 AAGATCTGCATCTT 292978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360564400752