Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1639 196 6e-45 >seq1639 Length=5101707 Score = 196 bits (216), Expect = 6e-45 Identities = 418/613 (68%), Gaps = 21/613 (3%) Strand=Plus/Plus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || |||||||||||||| | || || |||| || |||||||| || || || Sbjct 2279748 AAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTT 2279807 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAA 42180 | || ||||| || || || || |||||||| || || || ||||| | | ||||| || Sbjct 2279808 AACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAA 2279866 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT- 42239 |||||| ||||| || || || || | || || || | | | || || Sbjct 2279867 GAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATC 2279922 Query 42240 -GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || ||||| || ||||| | || ||||| || ||||| |||||||| || | Sbjct 2279923 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||| |||| | | | || || ||||||| | ||| ||||||| | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || || |||||||||||||| || ||||| || || |||||| | ||||| | Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCG 2280102 Query 42417 TAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || || || || | ||| ||||| ||| | ||| || ||| ||||||||| Sbjct 2280103 AGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGAT 2280161 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTA 42532 || || || || || | || ||||| || || | ||| | || || | | || Sbjct 2280162 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTC 2280221 Query 42533 TTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 | |||||| |||| |||| |||| |||||||||||| | ||||| || |||||| Sbjct 2280222 TCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCT 2280278 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || || || || ||||| | |||||| || | || || |||||||| ||| ||||| Sbjct 2280279 TCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCTG 2280338 Query 42650 TTTGGATTTGGTG 42662 | ||| |||||| Sbjct 2280339 TCTGGGGTTGGTG 2280351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122891317440