Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1177 107 2e-18 seq793 98.7 1e-15 seq204 98.7 1e-15 seq971 89.7 5e-13 seq1208 86.0 6e-12 seq406 84.2 2e-11 >seq1177 Length=2734319 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||| || || | || |||||||| || |||||||||||| | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || |||||||| || |||||| | |||||| || ||||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||| || || | || |||||||| || |||||||||||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || |||||||| || |||| | | |||||| || ||||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || || ||| || | | || | ||||| | | || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq204 Length=2333866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || ||||||| || |||||||| || |||||||||||| Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| || || |||| | |||||||||||| || || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 1139183 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 1139182 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 >seq971 Length=4928269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 ||| || | ||||| ||||| ||||| || ||||||||||| ||| | | | | | Sbjct 3107467 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCTAAGGTTCGGCCA-T 3107525 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||||||||| ||||||||| | ||||| | ||| |||||||| ||||| || ||||||| Sbjct 3107526 CTTCGAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCGGGTGGTATACCCTCTTTGT 3107585 Query 143091 C 143091 | Sbjct 3107586 C 3107586 >seq1208 Length=4595443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||| || || | || ||||| || || ||||||||||| | Sbjct 3925577 CCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCC 3925518 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || |||||||| || |||| | | |||||| || |||| Sbjct 3925517 AAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGA 3925458 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||| |||| ||||| ||| ||| || | | || | || || | | |||| Sbjct 3925457 ATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATC 3925398 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 3925397 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 >seq406 Length=3140938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/122 (77%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 143029 ||| || ||||||| || || ||||| || |||||||| || | | | ||| |||| Sbjct 2970426 CAAGACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTC-CGC-TAGTGTTCGACCA 2970483 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||||||||||||| | ||||| | || ||||| || ||||| || |||||| Sbjct 2970484 TCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGTATTCCCTCTTTG 2970543 Query 143090 TC 143091 || Sbjct 2970544 TC 2970545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002079550080