Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1639 96.9 5e-15 >seq1639 Length=5101707 Score = 96.9 bits (106), Expect = 5e-15 Identities = 367/563 (65%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| || || | || || || ||||| | ||||| || ||| Sbjct 2280307 GAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGGACCGCTGAAGAAGTAGAT 2280248 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || || | ||| ||||||||||| | | | || ||| || | || || Sbjct 2280247 CTATCACAAGACAATCGCGATTGGGAGAACAATCTCAACGACGGTGAACGTCACTTCATC 2280188 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 ||| | | || ||||| |||| || || |||||||| || ||||| | Sbjct 2280187 AAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTGTTAGAGAATCTCGCTTCT 2280128 Query 125196 CGATTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATC 125252 |||||| | || ||| | | || | |||| | |||||||| || || ||||| ||| Sbjct 2280127 CGATTCATGTCCGATGTTCA--AGTCTCGGAGGCG-CGTGCTTTCTATGGTTTCCAGATC 2280071 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 |||||| ||| | ||||| || ||||| | || | || | ||| || ||| Sbjct 2280070 GCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTCGATACGTATATCAAAGAT 2280011 Query 125313 CCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || | | | ||| || ||| ||| || || ||| | || | | || || Sbjct 2280010 AACAAAGAGAGAGATCAT-CTATTTCGCGCGATTGAAACGATTCCTTGCGTCGCGAAGAA 2279952 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||||| |||| ||| |||||||| | | ||| ||||| | || || | | Sbjct 2279951 AGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAAACCTTCG----CTGAACGAATTG 2279896 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGG 125489 | || ||||| || || ||||||||||| || || || |||||| ||||||| ||| Sbjct 2279895 TAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGC-TCCATCTTCTGG 2279837 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || ||||| || || |||||||| || | || | ||||| || || || |||||| Sbjct 2279836 CTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCACGAGAC 2279777 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 || ||| ||||||| || || || Sbjct 2279776 GAAGGCTTACACTGCGATTTCGC 2279754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041192261440