Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq204 116 3e-21 seq1177 107 1e-18 seq1396 100 2e-16 seq793 93.3 3e-14 >seq204 Length=2333866 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || ||||| || |||||||||||| || |||| ||||||| Sbjct 1139344 ACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCC 1139285 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | || |||||||| || || ||| |||||||| ||||| Sbjct 1139284 AATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGG 1139225 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || || || ||| ||| || |||| ||| || || || Sbjct 1139224 ATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTTC 1139165 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || || || ||||| || || || ||||| |||| Sbjct 1139164 CCCGTTAGGGTTTTCACGAAGATCTGCATTTTTG 1139131 >seq1177 Length=2734319 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| || || ||||| || ||||| || |||||||||||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||||| || ||| | ||||| | ||| ||||| ||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || ||||| ||| | || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCGGAGCTCTCGAC 987775 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 987774 CTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1396 Length=1446835 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || |||||||| || | | |||| ||||| Sbjct 400360 AAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCT 400301 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | ||||| | || ||||| |||||| || || ||||| Sbjct 400300 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC 400241 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| | || ||||| ||| | || || || || || ||||| Sbjct 400240 TGAATTTTAGCT-TTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGGT 400182 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || || |||||||||||| Sbjct 400181 CTTTCCAGTCAACGTCTTGACGAAAATTTGCATA 400148 >seq793 Length=772624 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| || || ||||| || ||||| || |||||||||||| Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||||| || ||| | || || | ||| ||||| ||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || ||||| ||| ||| | || ||||| || | || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 610755 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || ||||||||||| Sbjct 610754 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170619069304