Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1396 107 2e-18 seq1328 100 2e-16 >seq1396 Length=1446835 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || |||| ||| | ||||||||||| ||||| ||||| || ||| Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| || || ||||| || ||| | || | ||||||||| ||| || Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| |||||| ||| || | | ||| || ||| |||| Sbjct 400255 ATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACC 400196 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| ||||||||||| Sbjct 400195 TCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| |||| || | || || ||||| |||||||||||||| ||| Sbjct 399919 CCACCACGGAGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 399860 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || || | ||||| |||||||||||| || Sbjct 399859 AACGTACGGCCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGA 399800 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | |||||| ||||| || || ||| || | | ||| || | ||| || ||| Sbjct 399799 ATGCCCTCCTTGTCTTGGATCTTGGCTTTAACGTTGTCGATTGT---GTCAGAGCTTTCC 399743 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||| ||| || || || || || | ||| || || || || ||||| | |||| Sbjct 399742 ACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATCTGAAAT 399686 >seq1328 Length=1576597 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18816 CTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCA 18875 |||||| |||||| | |||| ||| | || ||||||||||||||||||| ||| |||| Sbjct 273106 CTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCA 273047 Query 18876 TTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 || | | || || ||||||||||| ||| |||||||||||||||| ||| Sbjct 273046 AAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCC 272994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414562977733936