Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq204 96.9 2e-15 seq1328 86.0 4e-12 >seq204 Length=2333866 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | || | ||||||||| | || || ||||| || || |||||||| | Sbjct 1139364 CACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGG 1139305 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | ||| |||||||| ||||| || |||||||||||||| |||| | Sbjct 1139304 CGAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTG 1139245 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || ||| ||| || | | || |||||| | || || Sbjct 1139244 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAA 1139185 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 | || || ||||| || || ||||| || ||||| ||||| || ||||| ||| Sbjct 1139184 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 1139132 >seq1328 Length=1576597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 33146 CCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAA 33205 ||||| |||| | ||||| || | || ||||| ||||| ||||||| ||||| |||| Sbjct 273104 CCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAA 273045 Query 33206 TTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATG 33265 | | || || | || || || ||| || | | |||||||||| || || Sbjct 273044 GTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATT 272985 Query 33266 CCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||| || || ||| |||| | || | | ||| |||||| | || ||| Sbjct 272984 CCTTCCTTATCTTGGATCTTTGCCT---TAACATTGTCAATTGTGTCGGAGCTTTCAACC 272928 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || || ||||||||||| ||||| || |||||||| Sbjct 272927 TCAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770047361712