Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq406 87.8 2e-12 seq1396 84.2 2e-11 >seq406 Length=3140938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/148 (74%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 19971 TTTATCATTTTCCTCCTCGTAA-CCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| ||| | | ||| |||||| |||||||| || || || ||||| || ||| Sbjct 2970400 TTTATCATAGTCCCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATG 2970459 Query 20030 TTGTAATCGCCCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCT 20087 ||||| || | |||| || || |||||| | |||||| || ||| | || ||||||| Sbjct 2970460 TTGTAGTCCGC--TAGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCT 2970517 Query 20088 GTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||| || | || |||||||| Sbjct 2970518 GTTGATCAGGTGGTATTCCCTCTTTGTC 2970545 >seq1396 Length=1446835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| ||||| || |||||||| || || || |||||||| || || Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||| | |||||| || ||| | || | ||||| || || || Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || ||||| |||||| ||| || | | | | | ||| || | ||| Sbjct 400255 ATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGG-AGCTCTCCAC 400197 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || |||||||| ||||| ||||||||||| Sbjct 400196 CTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419577258930264