Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1639 156 1e-32 seq204 149 1e-30 seq793 145 2e-29 seq1396 136 9e-27 seq1328 132 1e-25 seq1177 125 2e-23 seq406 123 6e-23 seq1208 107 4e-18 >seq1639 Length=5101707 Score = 156 bits (172), Expect = 1e-32 Identities = 247/346 (71%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004 ||| || || |||||||| || || ||||| ||||| || |||||||| ||||| | | Sbjct 2280089 TTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCT 2280030 Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGA-CTATTTTCTTCTATGAGAACTA 269063 ||||| ||||| | |||||||| || | || | | |||||| | || ||| | Sbjct 2280029 CGATACGTATATCAAAGATAACAAAGAGA-GAGATCATCTATTTCGCGCGATTGAAACGA 2279971 Query 269064 TGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG-ATAGCGCGCCT 269122 | || || || ||| || | ||||| |||||||||| ||| || | ||| Sbjct 2279970 TTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAAACCT 2279911 Query 269123 TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTT 269181 | || ||| | | || ||||| || ||| ||||| || ||||| || || |||| Sbjct 2279910 T-CGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTT 2279852 Query 269182 TGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 ||| | ||||| ||| | |||||| |||| || ||||| || ||||||||||| ||||| Sbjct 2279851 TGCTCC-ATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGA 2279793 Query 269242 ATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTA 269287 |||||| | |||||||| ||||||||||| |||||||| ||| Sbjct 2279792 ATTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCTTGCTTA 2279747 >seq204 Length=2333866 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| || | ||| | || ||||||||||| || || || || | Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| |||||||| | ||||||||| || || |||| | || ||||| || || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || || ||||| ||||| ||||| || | || ||| | ||| ||| Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 1139183 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||| || || || ||||| || || ||||||||||| Sbjct 1139182 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq793 Length=772624 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| || || || || ||||||| |||||||| ||||| Sbjct 611147 AAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTC 611088 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || ||||| || ||||| || || || ||||| |||||||| || || Sbjct 611087 TTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTC 611028 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||||||||| || || || | ||||| || | || ||||| | ||||| | Sbjct 611027 CTGGATCTTTGCTTTGACGTTGTCAATAGTATC-AGAGCTCTCAACCTCCAAAGTAATGG 610969 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || || || ||||| |||||||| Sbjct 610968 TCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || | || | || |||||||||||||| || || || Sbjct 610936 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCG 610877 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| ||||| || || || |||| || || || || ||| Sbjct 610876 GCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGA 610817 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || |||||||||||||| |||||||| || ||||| || | ||| || || | || Sbjct 610816 GGAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTC-AGAGCTCTC 610758 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| |||||||| || || || ||||| Sbjct 610757 AACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1396 Length=1446835 Score = 136 bits (150), Expect = 9e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||| || |||||||| || ||||||| | |||||| |||||||| ||||||||||| Sbjct 400346 TGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCC 400287 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||| || | ||||| || || || || || || || || |||||||| || ||||| Sbjct 400286 AGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGAATTTTAGCTTT 400227 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 ||||| || | ||| ||| || | || ||||| | || || ||||| ||||| | | Sbjct 400226 GACATTGTCGATGGTGTCG-GAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAACG 400168 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || || ||||| Sbjct 400167 TCTTGACGAAAATTTGCAT 400149 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | ||| | || ||||| ||||||||||| || |||| | || | Sbjct 399910 AGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGG 399851 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || ||||| || |||||||| || || |||||||| ||||| ||||| || || || Sbjct 399850 CCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCC 399791 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGT 104518 || || || ||||| ||||| || || || | || || ||| ||| ||||| || Sbjct 399790 TTGTCTTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCT---TTCCACCTCGAGG 399734 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| || || || || || || || |||||||| Sbjct 399733 GTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||||| || || | |||||| || || ||||||||| Sbjct 401029 GTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCA 400970 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 400969 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTC 400910 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| ||||| || ||||| || || | || Sbjct 400909 ACGTTGTCAATGGTGTCG-GAGCTCTCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGT 400851 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 400850 CTTCACGAAAATCTGCAT 400833 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || | | || | ||| || || | || ||||| Sbjct 400573 GTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCCTCCAACTGCTTTCCG 400514 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || ||||| |||||||| |||||||||||||| || || Sbjct 400513 GCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTC 400454 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || | || ||||| | || || ||||| ||||| || || Sbjct 400453 ACGTTGTCGATGGTGTC-TGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGAGT 400395 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 400394 CTTGACGAAAATCTGCAT 400377 >seq1328 Length=1576597 Score = 132 bits (146), Expect = 1e-25 Identities = 150/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | || || | ||| || || ||||| || || Sbjct 273305 GTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGTTGCTTACCG 273246 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || || ||||| |||||||||||||| || ||||| || || Sbjct 273245 GCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTG 273186 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | |||||| ||| ||| ||||| ||||| |||||||| || ||||| Sbjct 273185 ACGTTATCGATGGTATCTGAGCT---TTCGACCTCAAGTGTTATAGTCTTCCCTGTAAGA 273129 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 273128 GTCTTAACAAAGATCTGCAT 273109 Score = 132 bits (146), Expect = 1e-25 Identities = 171/232 (74%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| |||||| | ||| | || ||||||||||| | || |||||| Sbjct 273567 ATACCACCTCTTAGAAGAAGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCA 273508 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT-TAGCCTCTGTTGATCAGG 104448 | ||||| | ||| || || || ||||| ||||| || || || |||||||| || | Sbjct 273507 GCAAGAGTGCGACCATCCTCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAG 273448 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-T 104507 | ||||||||||| || |||||||| || || ||||| || | ||| | | || | | Sbjct 273447 TTGGATTCCTTCTTTTTCTTGAATCTTCGCCTTGACATTGTCAATGGTGT-GAGAGCTCT 273389 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| ||||| || || ||||| || |||| ||||| || ||||| Sbjct 273388 CAACTTCTAGAGTAATGGTTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 >seq1177 Length=2734319 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || | || | || ||||||||||| || || || || Sbjct 987956 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCG 987897 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| ||||| || || || || | || || || || ||| Sbjct 987896 GCCAAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGA 987837 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| || ||||| || | ||| ||| || | || Sbjct 987836 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGG-AGCTCTC 987778 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| |||||||| || || || ||||| Sbjct 987777 GACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq406 Length=3140938 Score = 123 bits (136), Expect = 6e-23 Identities = 119/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 104322 CTTTATT-TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAAT 104379 |||||| || |||| || || ||||| | || | ||| | || || |||||||| || Sbjct 2970399 CTTTATCATAGTCCCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGAT 2970458 Query 104380 ATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTG 104439 || ||||| | ||| |||| ||| ||||| |||||||| |||||||| || |||||||| Sbjct 2970459 GTTGTAGTCCGCTAGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTG 2970518 Query 104440 TTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||||||| |||||||| ||||| ||||| Sbjct 2970519 TTGATCAGGTGGTATTCCCTCTTTGTCCTG 2970548 >seq1208 Length=4595443 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || | | || | || ||||| || ||||| || Sbjct 3925547 GTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCTTCCAGCTGTTTACCG 3925488 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| || || || || |||| || |||| || |||||||||||||| || Sbjct 3925487 GCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGAATCTTTGCCTTA 3925428 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||||| || | |||| ||| || ||||| ||||| ||||| ||||| Sbjct 3925427 ACATTGTCGATAGTATC-AGAGCTCTCTATCTCGAGAGTAATGGTCTTGCCAGTGAGTGT 3925369 Query 104542 TTTTACAAATATCTGCAT 104559 ||| || || || ||||| Sbjct 3925368 TTTCACGAAAATTTGCAT 3925351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369721544352