Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1396 89.7 4e-13 seq1208 86.0 5e-12 >seq1396 Length=1446835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||| || |||||||| ||||||| | || ||||||| Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || | ||||||||| || || | || |||||||||| Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| |||| ||| | ||| ||||| || Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| ||||| ||||||||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | || || || |||||||| |||||| ||||||||||| ||||| Sbjct 400376 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGC 400317 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| || || || || || | | || || | |||||| ||| || Sbjct 400316 CAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGG 400257 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| |||||| |||| | | ||||| |||| |||| Sbjct 400256 AATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 400197 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | || || || ||||| ||||| Sbjct 400196 CTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 >seq1208 Length=4595443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| ||||| || || |||||||| |||||| || | Sbjct 3925541 TCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAG 3925482 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 ||||| | ||||| ||| || | |||||||||| ||| || ||| | | Sbjct 3925481 ATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTG 3925422 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || ||||| | ||| |||||| || ||||| || || ||||| |||||||| Sbjct 3925421 TCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACG 3925362 Query 48716 AAAATCTGCATC 48727 ||||| |||||| Sbjct 3925361 AAAATTTGCATC 3925350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421241219505944