Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1098 120 2e-22 seq1651 118 6e-22 seq1071 114 7e-21 seq598 113 2e-20 seq673 111 8e-20 seq268 111 8e-20 seq551 109 3e-19 seq1810 105 3e-18 seq1326 105 3e-18 seq1604 104 1e-17 seq406 100 1e-16 seq1639 93.3 2e-14 seq20 93.3 2e-14 >seq1098 Length=1074956 Score = 120 bits (132), Expect = 2e-22 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAA--TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||| | |||| || |||| | ||||| ||||||||| | | |||||||| |||||| Sbjct 848130 GAAACACAGAAAGAAAGTAAACATTCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCT 848071 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 848070 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 848027 >seq1651 Length=2713865 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 250751 AAAAAATAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 250692 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 250691 GCTCTAACCAACTGAGCTAATGGGCCG 250665 >seq1071 Length=2817113 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1416008 AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1416067 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 1416068 AACTGAGCTAATGGGCC 1416084 >seq598 Length=3584617 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 2069050 CAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 2068991 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| Sbjct 2068990 CCAACTGAGCTAATGGGCC 2068972 >seq673 Length=587269 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| || |||| | |||||||| || | ||||||||||| |||||||||||||| Sbjct 55704 GAATTACTAGAAAAAGATAATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTAT 55645 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 55644 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 55610 >seq268 Length=2618192 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 659691 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 659632 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 659631 CAACTGAGCTAATGGGCC 659614 >seq551 Length=311671 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 113458 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 113399 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 113398 TGAGCTAATGGGCC 113385 >seq1810 Length=8348134 Score = 105 bits (116), Expect = 3e-18 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 ||| ||| ||||| || | ||||||||||| ||||||||||||||||||||||||||| Sbjct 2333402 AATTAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTC 2333461 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 2333462 TAACCAACTGAGCTAATAGGCC 2333483 >seq1326 Length=1995753 Score = 105 bits (116), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 || ||| ||| || | |||||||| || ||||| || | ||||||||||| ||||| Sbjct 1525786 GGAAAAAATATAAAGACTAAAAAAT-AACGTGGCCTATACAGGGATCGAACCTGTGACCT 1525728 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 1525727 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 1525684 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 1527042 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1526983 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1526982 CAACTGAGCTAATAGGCC 1526965 >seq1604 Length=1253100 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 69709 AAAAATTAA--TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 69652 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 69651 CTCTAACCAACTGAGCTAATAGGCC 69627 >seq406 Length=3140938 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 2719637 AAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 2719578 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 2719577 AACTGAGCTAATAGGCC 2719561 >seq1639 Length=5101707 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1451246 AAAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1451305 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1451306 CAACTGAGCTAATAGGCC 1451323 >seq20 Length=2941094 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 2720331 AAGTTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 2720390 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2720391 CAACTGAGCTAATAGGCC 2720408 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485004619744