Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1177 143 2e-29 seq793 140 3e-28 seq1208 125 6e-24 seq1396 116 3e-21 seq1328 114 1e-20 seq204 98.7 9e-16 seq1125 91.5 1e-13 seq236 89.7 5e-13 >seq1177 Length=2734319 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || || | |||||||| | || ||||| || || | ||| |||||| | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| ||| | ||||| ||||||||||| || |||||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || |||||||| || | ||| ||||| | | ||||| Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| || |||||||| || || ||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || || | |||||||| | || ||||| || || | ||| |||||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || |||||||| ||| | ||||||||||||||||| || |||||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || |||||||| || | ||| ||||||| | || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || |||||||| || || ||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||| || || | ||| | || || ||||| || ||| Sbjct 611131 GTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCG 611072 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | |||||||| || ||||| || ||||| ||||| | || ||||| ||| Sbjct 611071 GCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTG 611012 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | ||| |||| | || || || | || ||||| || ||||| ||||| Sbjct 611011 ACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTC 610952 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 610951 TTGACAAAGATCTGCAT 610935 >seq1208 Length=4595443 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | |||||||| | || |||||||| || | ||| ||||| | Sbjct 3925577 CCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCC 3925518 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || |||| ||||||||||| ||| | ||||||||||||||||| || ||||| Sbjct 3925517 AAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGA 3925458 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||| ||||| | ||| |||||||| || | ||| ||| |||| | || | Sbjct 3925457 ATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATC 3925398 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || ||||| || |||||||| || || ||||| Sbjct 3925397 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 107 bits (118), Expect = 2e-18 Identities = 172/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| | || | |||||| || | || || || ||||| | Sbjct 3925818 AAAAATTTGCATACCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGAT 3925759 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || || ||||| || |||||| ||||| || || |||||||| || ||| Sbjct 3925758 GTTGTAGTCAG-CA-AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGAT-AAGCTT 3925702 Query 94886 -TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 ||||| || ||||| || ||||| ||||| | ||| || || || ||| | | | ||| Sbjct 3925701 CTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCAATAGT 3925642 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||| | || || || | ||||||||||| || || | || |||||||||||||| Sbjct 3925641 ATCAGAGCTTTCAACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTG 3925582 Query 95005 C 95005 | Sbjct 3925581 C 3925581 >seq1396 Length=1446835 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | |||||| || || |||| |||||| Sbjct 400814 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTC 400755 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || | ||||| | | ||||| || |||||||||||||| ||||| | Sbjct 400754 AAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 400695 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | | | ||||||| | || || || | ||||| ||||| Sbjct 400694 GATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTTT 400635 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | ||| || || ||||||||||||| Sbjct 400634 GCCAGTCAAAGTCTTGACGAAGATCTGCATGC 400603 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || |||||||| || | || ||||| || || | |||||| Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| | || |||||||| |||||||| || || ||||| | Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || ||| | ||| ||||||| | || || || | ||||| || ||| Sbjct 399781 ATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTT 399722 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||| Sbjct 399721 CCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | || |||||||| || | ||| || || || |||| || |||| Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCA--GTGTGCGACCGTCCT 400984 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||||||||| | ||||| | | ||||| |||||||| |||||||| ||||| | Sbjct 400983 CGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCT 400924 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | | ||||| | | || || || | |||||||| | Sbjct 400923 GGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCT 400864 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||| ||||| || |||||||| Sbjct 400863 TCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || |||||| | ||||| |||||||||||||| || || ||||| || ||| Sbjct 400075 TCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTG 400016 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || ||| | ||| ||||||| | || || || | ||||| Sbjct 400015 TCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATA 399956 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || ||||| || || || ||||| Sbjct 399955 GTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 >seq1328 Length=1576597 Score = 114 bits (126), Expect = 1e-20 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| || ||||| || | ||| ||||| | || || || || |||||| || Sbjct 273312 GTGAAGAGTTGACTCCTTCTGGATGTTGTAATC-CGCA-AGCGTACGACCATCCTCGAGT 273255 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| ||||||| | ||| ||||| |||||||| || |||||||| || | || Sbjct 273254 TGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATC 273195 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| ||| || || | | ||||| |||| || || || || || Sbjct 273194 TTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCT 273135 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || |||||||||||||| Sbjct 273134 GTAAGAGTCTTAACAAAGATCTGCAT 273109 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||| ||| ||||| || || ||||| || || | |||| |||||| Sbjct 273546 ACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCAGCAAGAGTGCGACCATCCTCA 273487 Query 94859 AGCTGTTTTCCGCCAAAGATTAA-TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || | ||||| || ||| || || ||| | | || |||||||| || | Sbjct 273486 AGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAGTTGGATTCCTTCTTTTTCTTG 273427 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||||| | | | |||| || | || || || | || |||||||| Sbjct 273426 AATCTTCGCCTTGACATTGTCAATGGTGTGAGAGCTCTCAACTTCTAGAGTAATGGTTTT 273367 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| || |||| |||||| || ||||||| Sbjct 273366 TCCAGTGAGGGTTTCCACAAACATTTGCATGC 273335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| | | ||||||| | ||| || || || || | || | Sbjct 272887 TTTGCATACCACCTCTCAACCTAAGAGCCAAGTGGAGAGTTGACTCTTTCTGGATATTGT 272828 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| || ||| | |||||| ||| |||| ||| |||||| | ||||||||| Sbjct 272827 AATCAGCCAAAGTACAGCTATCCTCTAGCAGTTTACCGGAAAAGATGAGTCTTTGCTGG- 272769 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || ||||||| ||||||||||| | ||| ||||||||||| Sbjct 272768 CTAGAGGAATCCCTTCTTTGTCTTGAATCTTTGCCTTGAC 272729 >seq204 Length=2333866 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | |||||| || | ||| ||||| || || | ||| |||||| Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| ||||||||| | |||||||| | ||||||||| || || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || || || || | ||| ||||| | || || Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 1139183 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || || |||||||| ||||||||||| Sbjct 1139182 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 >seq1125 Length=2998257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | || || |||| ||||| || || || || ||||| ||| Sbjct 292821 TCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTG 292880 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | ||| ||||||| ||||| || | ||||| Sbjct 292881 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATT 292940 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||| ||||||||||| Sbjct 292941 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 292975 >seq236 Length=1640546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| | |||| | || || |||||||| ||| Sbjct 1089231 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCG 1089172 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || |||| ||||| || || || || ||||| ||||| | || || || || Sbjct 1089171 GCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTC 1089112 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||| ||||| | | ||||| || | || ||||| || || || || ||| Sbjct 1089111 ACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 1089052 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 1089051 TTCACGAAGATCTGCAT 1089035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448280306523840