Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1202 152 8e-33 seq1071 152 8e-33 seq1259 145 1e-30 seq971 131 3e-26 seq608 113 7e-21 seq146 113 7e-21 >seq1202 Length=5651650 Score = 152 bits (168), Expect = 8e-33 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 1416200 GAGATAACATCCAAGGAATCACCAAGCCTGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 1416141 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| ||| | |||||||| | Sbjct 1416140 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 1416081 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | ||| ||||||||||||| | |||||||| ||| Sbjct 1416080 AGAACGTGATTCGTGACGCTGTTACCTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 1416021 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| |||| || || | || | ||||| | | |||| || || || ||| Sbjct 1416020 CTATGGATGTCGTTTACGCTCTTAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 1415961 Query 16698 AA 16699 || Sbjct 1415960 AA 1415959 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 1261285 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 1261344 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| || | |||||||| | Sbjct 1261345 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTCCTCAAGATCTTTTTGG 1261404 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | ||| ||||||||||||| | |||||||| ||| Sbjct 1261405 AGAACGTGATTCGTGACGCTGTTACCTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 1261464 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| || || | || | ||||| | | |||| || || || ||| Sbjct 1261465 CCATGGATGTCGTTTACGCTCTTAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 1261524 Query 16698 AA 16699 || Sbjct 1261525 AA 1261526 >seq1071 Length=2817113 Score = 152 bits (168), Expect = 8e-33 Identities = 183/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| ||||| ||||| ||||||||||| || || |||||||| || ||| | || Sbjct 888007 TCTTAGAGACAACATTCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCACGTAGAGG 887948 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | || || |||| ||||||| | | || | |||||||| Sbjct 887947 TGGTGTCAAGCGTATTAGCGGTCTGATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTT 887888 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||||||| ||| || || ||| || |||||||| | | | ||||| || Sbjct 887887 TCTCGAGAATGTTATCCGTGACGCCGTCACCTACACTGAGCACGCCAGAAGGAAGACAGT 887828 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | || || || ||||| | ||||| || | | || ||||| || Sbjct 887827 CACCGCCATGGATGTTGTTTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGG 887768 Query 16693 AAGTTAATC 16701 ||||||| Sbjct 887767 CGGTTAATC 887759 Score = 149 bits (164), Expect = 1e-31 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| ||||| ||||| ||||||||||| || || |||||||| |||||| | || Sbjct 803793 TCTTAGAGACAACATTCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGG 803852 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||| || |||| || |||| | | || | |||||||| Sbjct 803853 TGGTGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACAAGAGGAGTCCTCAAGATCTT 803912 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || |||| ||| || || ||| || |||||||| | | | ||||| || Sbjct 803913 TCTCGAGAATGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCAGAAGGAAGACGGT 803972 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | ||||| || ||||| | ||||| || | | || || || || Sbjct 803973 GACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGGTTCGG 804032 Query 16693 AAGTTAATCT 16702 |||||||| Sbjct 804033 CGGTTAATCT 804042 >seq1259 Length=1985952 Score = 145 bits (160), Expect = 1e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| |||||||| || |||||||| |||||| | || || | Sbjct 522834 GAGACAACATCCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGAGGTG 522893 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| || ||| ||| |||||||||| | | | ||| ||||||||||| || Sbjct 522894 TGAAACGTATCAGTGGTTTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATCTTTCTTG 522953 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | ||||| || || |||| | |||||||| || Sbjct 522954 AGAATGTGATTAGAGATGCTGTGACGTATACTGAACATGCTAGGAGGAAGACTGTTACTG 523013 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | |||||| | |||||||| ||||| | ||||| | | ||||||| ||||| Sbjct 523014 CTATGGATGTTGTCTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTTGG 523068 >seq971 Length=4928269 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| || ||||| || || || || || ||||| || || Sbjct 1779105 GCGAAGAGACATCGGAAAGTTCTCCGGGATAATATTCAGGGGATTACGAAGCCGGCGATT 1779164 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | | ||||| || |||||| | ||| ||| |||||||||||| | Sbjct 1779165 CGTCGTTTAGCGAGAAGAGGTGGTGTGAAGCGTATTAGTGGTTTGATCTATGAAGAGACT 1779224 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | |||||||| ||| ||| || || | ||||||| | || || ||| Sbjct 1779225 CGTGGTGTTCTTAAGATCTTTCTCGAGAATGTGATTCGTGATGCTGTTACTTACACTGAG 1779284 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||| || || | |||||| | || ||||| ||||| | ||||| Sbjct 1779285 CATGCTCGTCGGAAGACGGTGACGGCGATGGATGTTGTTTATGCGTTGAAGAGGCAAGGA 1779344 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 1779345 CGAACTTTGTATGGATTTGG 1779364 >seq608 Length=2187891 Score = 113 bits (124), Expect = 7e-21 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || |||||||||||||| ||||| || || || | |||||||| | ||||| | Sbjct 1713989 GAGACAATATCCAAGGAATCACTAAGCCGGCGATTCGAAGATTGGCTCGTAGAGGTGGCG 1714048 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 1714049 TTAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 1714108 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || | || ||||||||||| | ||||| || || Sbjct 1714109 AGAATGTAATCCGTGACGCAGTTACTTACACCGAGCACGCACGGAGGAAGACGGTGACTG 1714168 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| |||||| | || | ||||| | | ||||||| || || ||| Sbjct 1714169 CCATGGATGTCGTTTATGCACTTAAGAGACAAGGAAGAACTCTTTATGGATTCGGCGGTT 1714228 Query 16698 AA 16699 || Sbjct 1714229 AA 1714230 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||||| || || | Sbjct 1881630 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTCGAGGAGGCG 1881571 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| || |||| || |||| |||| || | |||||||| | Sbjct 1881570 TTAAGCGTATTAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 1881511 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || | || ||||||||||| | ||||| || || Sbjct 1881510 AGAATGTAATCCGTGACGCAGTTACTTACACCGAGCACGCACGGAGGAAGACGGTGACTG 1881451 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| ||||| | || | ||||| | | |||| || ||||| ||| Sbjct 1881450 CCATGGATGTCGTTTATGCTCTTAAGAGACAAGGAAGGACTCTTTACGGATTTGGCGGTT 1881391 Query 16698 AA 16699 || Sbjct 1881390 AA 1881389 >seq146 Length=739853 Score = 113 bits (124), Expect = 7e-21 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| |||||||||||||| || || || || || |||||||| || | | || Sbjct 97262 TCTACGAGACAACATCCAAGGAATTACGAAACCTGCGATTCGTCGTCTCGCGAGAAGAGG 97321 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| || ||| ||| |||| ||||||| ||| | ||| | |||||||| Sbjct 97322 AGGCGTTAAGCGTATCAGTGGTTTGATCTACGAAGAGACTCGCGGCGTTCTCAAGATCTT 97381 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||| || | || || ||||||||| || || || || Sbjct 97382 TCTCGAGAACGTGATTCGTGACGCCGTTACTTACACTGAGCACGCTCGCCGGAAAACAGT 97441 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| |||| || || | || | ||||| || | | ||||| || || Sbjct 97442 TACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGGACTTTGTATGGATTCGG 97501 Query 16693 AAGTTAA 16699 ||||| Sbjct 97502 CGGTTAA 97508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073422587192