Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq178 114 4e-21 >seq178 Length=2153606 Score = 114 bits (126), Expect = 4e-21 Identities = 129/169 (76%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCT-CTTGCTGT 19711 || ||| | || ||||| || |||||| || | || | |||| || |||||||| Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 19712 GTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCT 19770 ||||| | | || ||| ||||||| || |||||| ||||||||||||||| || |||| Sbjct 356648 -TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 356706 Query 19771 CTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCT 19819 |||||||||| ||||||||| | ||| |||| || || ||||| || || Sbjct 356707 CTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144438265565664