Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1728 105 1e-17 seq178 105 1e-17 >seq1728 Length=1434513 Score = 105 bits (116), Expect = 1e-17 Identities = 223/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||||| |||||| || || || |||||||| | |||||||| | | | || | Sbjct 580428 CTCCACAATCAGAGACGACGCCGTTTCATCCCAGATCTCCTTACGCAGCTTCCAAATGCG 580487 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 || | ||||| || |||||| || || | ||||| || ||| || || | Sbjct 580488 CTGCTCATTGGTACACAGTGAATTACCGAGAAGCCTATGGTCTCTTCGCCTGTAACGGAA 580547 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 | | ||||||||||| || || | ||||||||| || || ||| | ||||| ||| Sbjct 580548 TCTTGTTCAATCACGAGTCACCGCGCCGAGGTGAGAACTTCGTGACTAGGAAGATCACAA 580607 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || || |||| ||||| || |||| || || | ||||| ||||| | | Sbjct 580608 GAGCCTTGGGACGGATCAAGGTTGGTTTGCAGAGGAAGCTCTTCCTTGGGAATCTGCAGG 580667 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 | || ||||||||| ||| || ||||| ||||| |||||||| |||||||| | Sbjct 580668 CAGCAAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGCAGC 580727 Query 194131 AGGATGAACCCGATGATTATGTGATTGCTACAG 194163 | || | || |||||||| || | || |||| Sbjct 580728 AAGAGAAGCCAGATGATTACGTTGTGGCAACAG 580760 >seq178 Length=2153606 Score = 105 bits (116), Expect = 1e-17 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 211926 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGC-TT 211984 |||| | ||||||||||||||||| |||||| |||||| | ||||| |||| || Sbjct 356581 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGAC 356640 Query 211985 TCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAG 212044 | ||||| ||| | | || ||| | || ||||| || || || ||||||||| ||| Sbjct 356641 TTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAG 356700 Query 212045 GTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCT 212099 | || || || || |||||||| ||| | ||| |||| || || || ||||| || Sbjct 356701 GAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807535576408640