Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1639 188 9e-43 >seq1639 Length=5101707 Score = 188 bits (208), Expect = 9e-43 Identities = 601/910 (66%), Gaps = 39/910 (4%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||||| |||||||| |||||||| || ||||| || | | || || | Sbjct 2279460 TTTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGT 2279519 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| ||||| || || || | || | ||||| || | | Sbjct 2279520 TCCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTA-CCCAAG--AGCACCC 2279576 Query 33133 AAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT- 33188 || |||||||| || || || ||||| |||||| |||| ||||| || | Sbjct 2279577 AAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACC 2279636 Query 33189 AAGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 33246 || || ||||| || |||| | ||| ||| ||||| |||||||| Sbjct 2279637 AACGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCAATCTCGACCGCATCACAA 2279693 Query 33247 ATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAAC 33304 | || || | | |||||||||| | | | | | | ||| || | || | Sbjct 2279694 ACGATTGACTTGATACGTTCTTCACTCAGCTTTGTTTTGAGGAGTGTGTAGAGT--AAGC 2279751 Query 33305 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 33364 | |||||||||||||| | || ||||||| || | |||||| || || || | | Sbjct 2279752 AAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACC 2279811 Query 33365 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAG 33423 | ||||| || || || || |||||||| || ||||| || || | | ||||| |||||| Sbjct 2279812 CAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAAGAAG 2279870 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33480 || ||||| || ||| || || | || || || | | | || || || Sbjct 2279871 ATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATCCGTC 2279926 Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| || ||||| | || ||||| || ||||| |||||||| || || Sbjct 2279927 GATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCG 2279986 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||| |||| | | | || || ||||||| | ||| ||||||| | ||||||||||| Sbjct 2279987 AAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACAT 2280046 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || |||||||||||||| || ||||| || || |||||| | ||||| | | Sbjct 2280047 CTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGAC 2280106 Query 33660 CTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 || || || | ||| ||||| || | ||| || ||| ||||||||| || | Sbjct 2280107 TTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGG 2280165 Query 33719 CAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTC 33774 | || || || | || ||||| || || | || |||| | | | | | || | | Sbjct 2280166 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTG-TTCTCC 2280224 Query 33775 CAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 ||||| |||| |||| |||| |||||||||||| | ||||| || ||||| || Sbjct 2280225 CAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCTTCG 2280281 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTT 33891 || || || ||||| | |||||| || || ||||||||||| ||| ||||| | | Sbjct 2280282 GCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCTGTCT 2280341 Query 33892 GGATTTGGTG 33901 || |||||| Sbjct 2280342 GGGGTTGGTG 2280351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932062383040