Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq204 109 5e-19 seq971 100 3e-16 seq1177 89.7 5e-13 seq793 89.7 5e-13 seq1125 82.4 7e-11 >seq204 Length=2333866 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || || | || ||| | || | |||||| Sbjct 1139133 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 1139192 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | || ||| ||||| ||||| ||||| || || || ||| Sbjct 1139193 TCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 1139252 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | || | || ||| |||||| | ||||| | |||| || ||| || Sbjct 1139253 CAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTAC 1139312 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || |||||||| ||| | ||| |||| || | ||||||||||| Sbjct 1139313 AACATCCAGAAAGAATCAACTCTTCATTTGGTGCTTCGTCTTAGAGGAGG 1139362 >seq971 Length=4928269 Score = 100 bits (110), Expect = 3e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| |||||||||||||| || || | | || || ||||||||| Sbjct 3107586 GACAAAGAGGGTATACCACCCGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTCGAA 3107527 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 3107526 GATGGCCG-AACCTTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 3107468 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 3107467 GAGGCTCAGAGGTGGAA 3107451 >seq1177 Length=2734319 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| ||||||| || | ||||| | || | || | Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| || ||||| || || Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 987846 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 987847 CAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAAC 987906 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || |||| |||| || Sbjct 987907 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 987938 >seq793 Length=772624 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | ||||| || | ||||| |||| | || Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| || |||||||| || ||||| || || Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| |||||||| || |||| |||| || Sbjct 610887 ATTCAGAAAGAATCGACCCTCCACTTGGTTCT 610918 >seq1125 Length=2998257 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 292978 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCT 292919 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 292918 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGAC 292859 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| || || |||||||| | ||| | | |||||| Sbjct 292858 CAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCTTAGCCGACTAC 292799 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | || || ||||| Sbjct 292798 AACATCCAGAAGGAATCAACGCTTCACCTTGTCCT 292764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650768503680