Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1604 116 1e-20 seq1810 102 2e-16 seq598 96.9 9e-15 >seq1604 Length=1253100 Score = 116 bits (128), Expect = 1e-20 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| ||||| || | |||||| ||||| | Sbjct 403132 ATGAAAGATGATAGCATTGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATTAGC 403073 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || || ||| |||||||| | | | |||||||| Sbjct 403072 AAATCTGCTGGTGGTATTGGTGTTTCAGCTCATAATATTCGTGCAACTGGA-AGTTACAT 403014 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || || |||| Sbjct 403013 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAACGATAC 402954 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 402953 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 402915 >seq1810 Length=8348134 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || ||||| Sbjct 6693912 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTC 6693854 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| ||||| |||||||| ||||| Sbjct 6693853 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGCCTC 6693794 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 6693793 ATACTCCCTTCTTACATGCATTCTCGCTCA 6693764 >seq598 Length=3584617 Score = 96.9 bits (106), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || || || |||||||||||||| || || || || Sbjct 904882 CAGTTCTATGTGGCAGAAGGGGAACTCTCGTGTCAAATGTATCAGCGTTCAGCAGACATG 904823 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | ||||||| Sbjct 904822 GGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTCGCTCAC 904763 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | ||||| || ||||| || || || |||| || ||||| ||||| |||| | Sbjct 904762 GTGTGCAATCTTGTTCCTGGTGATTTTATCCATATTATTGGGGATGCTCATGTGTACAGA 904703 Query 111882 A 111882 | Sbjct 904702 A 904702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321136720208