Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1396 111 1e-19 >seq1396 Length=1446835 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| || | |||||| || ||| | || | | ||| |||||| || Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | | |||||| | |||| Sbjct 400255 ATACCCTCCTTGTCCTGAATTTTAGCT--TTGACATTGTCGATGGTGTCGGAGCTCTCCA 400198 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| ||||| |||| ||| ||||| ||||| ||||| Sbjct 400197 CCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || ||||| || || |||||||| || ||| Sbjct 400603 CCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCC 400544 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||| || || || ||| | || | || ||| |||||| ||| Sbjct 400543 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 400484 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || ||| | |||||| | | | | ||||| | |||| Sbjct 400483 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACC 400424 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||| || || || ||||| ||||||||||| Sbjct 400423 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078402452560