Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1366 118 7e-22 seq204 116 2e-21 seq1470 113 3e-20 seq1394 98.7 7e-16 seq1328 95.1 8e-15 seq1817 93.3 3e-14 seq793 93.3 3e-14 seq672 93.3 3e-14 seq1018 87.8 1e-12 seq1396 86.0 4e-12 seq1208 82.4 5e-11 >seq1366 Length=583463 Score = 118 bits (130), Expect = 7e-22 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 ||||| ||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 402255 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGAGAATCTCGT 402314 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || ||||||||||||||||||||||||| Sbjct 402315 TAATCCATTTATGCGCGTCACTAATTAGATGACGA 402349 >seq204 Length=2333866 Score = 116 bits (128), Expect = 2e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | ||| | ||||||||||||||| || || || || |||||||| | Sbjct 1139363 ACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 1139304 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | |||| || |||||||||||||| || |||| ||||| ||||| | || Sbjct 1139303 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGG 1139244 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || |||||||| | || || || |||||| Sbjct 1139243 GATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 1139184 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || || || || ||||| | |||||||||||| |||||||| ||| Sbjct 1139183 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 1139132 >seq1470 Length=2917085 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| ||| |||||| ||| ||||||||| |||| || |||||||| Sbjct 2349066 AAGCCCGTTCCCTTAGCTATGGTTTTGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2349125 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 2349126 TAATCCATTCATGCACGTCACTAATTAGATGACGA 2349160 >seq1394 Length=2969664 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| |||||||||| | ||||||||| |||| || |||||||| Sbjct 2761683 AAGCCCGTTCCCTTGGTTGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2761624 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 |||||| ||||||||||||||| Sbjct 2761623 TAATCCATTCATGCGCGTCACT 2761602 >seq1328 Length=1576597 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| | |||||||||| |||||||||||| ||||||| | |||| || |||||||| Sbjct 1550958 AAGACTGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAAACAGGGACAGTGGGAATCTCGT 1551017 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| || |||||||||||||||||||||||| Sbjct 1551018 TCTTCCATTTTTGCGCGTCACTAATTAGATGACGA 1551052 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38094 CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA 38153 |||||||| | | ||||| || || || ||||||||||||||||| ||||| |||| Sbjct 273104 CCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAA 273045 Query 38154 ACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG 38213 ||| | || || | ||||| |||||||| || || | || || || | |||| Sbjct 273044 GTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATT 272985 Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 ||||| || || || ||| ||| ||||| | | || || |||||||| || Sbjct 272984 CCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCA 272925 Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || ||||| | || || || || || ||||| Sbjct 272924 AGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1817 Length=49288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 35841 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 35900 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 35901 GCCCGTATTTAGCCTT 35916 >seq793 Length=772624 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || || | ||||| || || || || || ||||| |||||||| | Sbjct 610935 TACCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGG 610876 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || |||| ||||| ||||| || |||| | ||| || || | | Sbjct 610875 CCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAG 610816 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| ||| || ||| ||| ||||| | || || || || |||| Sbjct 610815 GAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAA 610756 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | ||||||||||| || ||||| Sbjct 610755 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq672 Length=7828947 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 3725061 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3725120 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3725121 GCCCGTATTTAGCCTT 3725136 >seq1018 Length=1246924 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||| |||| |||||||||||||||||| ||||| | Sbjct 812092 CTCTCTTTTCAAAGTCCTTTTCATTTTTACCTCGCGGTACTTGTTCGCTATCAGTCTCTC 812151 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 812152 GCCCATATTTAGCCTT 812167 >seq1396 Length=1446835 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| ||||| || ||| || || || |||||||| | | Sbjct 400603 CCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCC 400544 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || || || ||||||||||| || | | || || || | ||| Sbjct 400543 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 400484 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || ||| ||| || |||||| || | || || ||| || || || Sbjct 400483 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACC 400424 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | || || ||||| |||||||| Sbjct 400423 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq1208 Length=4595443 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||| || || | ||||| || || || ||||| || || |||||||| Sbjct 3925580 TTACCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCT 3925521 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 | ||| ||| || || | ||||| ||||| || |||| | ||| || || Sbjct 3925520 GCCAAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGA 3925461 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | | |||| |||||| ||| ||| ||| ||||| | || |||||| || || Sbjct 3925460 GGAATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCT 3925401 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || | ||||||||||| || ||||| Sbjct 3925400 ATCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939264263464