Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1639 158 2e-33 seq1604 89.7 7e-13 >seq1639 Length=5101707 Score = 158 bits (174), Expect = 2e-33 Identities = 408/607 (67%), Gaps = 25/607 (4%) Strand=Plus/Plus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 || || |||||||||||||||| || ||||||| || |||||||| || || || Sbjct 2279748 AAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTT 2279807 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAA 32776 | || ||||| || || || || |||||||| || ||||| ||||| | | ||||| || Sbjct 2279808 AACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAA 2279866 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT- 32835 ||| || ||||| || || || || | || || || | | | || || Sbjct 2279867 GAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAA----GGTTTGAGATC 2279922 Query 32836 -GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 || ||||| || ||||| | || ||||| || ||||| || || || || | Sbjct 2279923 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||| |||| | | | || || ||||||| | ||| ||||| | | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011 |||| || || |||||||||||||| || || || || || ||| ||||| | ||||| Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCC 2280101 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | || || || | ||| ||||| || | ||| || ||| ||||||||| Sbjct 2280102 GAGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGA 2280160 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTT 33126 || || || || || | || ||||| || || | || |||| | | | | | | Sbjct 2280161 TGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTG-T 2280219 Query 33127 TATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 | | |||||| |||| |||| |||| ||| |||||||| | ||||| || |||| Sbjct 2280220 TCTCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATG 2280276 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 | || || || || ||||| | |||||| || | || || ||||| || ||| |||| Sbjct 2280277 CTTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATC 2280336 Query 33244 TATTTGG 33250 | | ||| Sbjct 2280337 TGTCTGG 2280343 >seq1604 Length=1253100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | || | ||| || | || | || | || |||||||| |||||| Sbjct 402929 TCCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACC 402988 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || || |||||| | |||||||||||| | ||| Sbjct 402989 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGA 403048 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 403049 AACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 403108 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||||| || |||||||| ||||| | ||||| ||||| Sbjct 403109 GCCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616602742400