Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1396 123 2e-23 seq1328 122 8e-23 seq608 82.4 7e-11 >seq1396 Length=1446835 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| | ||||| | || |||||| ||| Sbjct 400605 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACCTTGGAGGTGGAGAGCTCT 400664 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 400665 GACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 400724 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || |||||||| | || |||| ||||||| ||| || || || Sbjct 400725 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTATAAC 400784 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || || || || || ||||||||||| Sbjct 400785 ATCCAGAAGGAGTCGACCCTTCACTTGGTGCTAAGGCT 400822 Score = 118 bits (130), Expect = 9e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || | ||||| |||| ||||| ||| Sbjct 399693 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 399752 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | || ||||| || || ||||| || || || Sbjct 399753 GACACAATCGACAACGTTAAAGCCAAGATCCAA-GACAAGGAGGGCATTCCTCCGGATCA 399811 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || || || || || |||| |||| || || ||| |||||||| Sbjct 399812 GCAGAGGCTTATCTTCGCTGGAAAGCAGCTAGAGGATGGCCGTACGTTGGCTGATTACAA 399871 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| || |||||||| || ||||| || |||||||| Sbjct 399872 TATTCAGAAGGAATCCACCCTCCATTTGGTCCTAAGGCT 399910 >seq1328 Length=1576597 Score = 122 bits (134), Expect = 8e-23 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || |||| || | || || || || Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTCC 272940 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| || || ||||| || || || |||| Sbjct 272941 GACACAATTGA--CAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACC 272998 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | ||||||||||||| ||||| | ||||||| || ||| ||| ||| ||| Sbjct 272999 AGCAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACA 273058 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAG 25224 |||||||||| || || || || || || || || ||| | ||||||| Sbjct 273059 ATATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGAGAGGAG 273106 >seq608 Length=2187891 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 59726 AACCATGCTGTGTTGTTAGTGGGTTACGGAGTACAAGACGGTGTGCCCTACTGGACGTTG 59785 |||||||||||||| | | ||||| ||||| ||||||| || || |||||| | Sbjct 2130612 AACCATGCTGTGTTAGCAATTGGTTATGGAGTTGAAGACGGCGTTCCGTACTGGCTTATA 2130671 Query 59786 AAAAACACATGGGGTGATGATTGGGGAGAACATGGATATTTCA 59828 || ||| ||||||| | |||||||||||| |||| ||||||| Sbjct 2130672 AAGAACTCATGGGGAGCTGATTGGGGAGACAATGGCTATTTCA 2130714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317733376360