Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1639 223 4e-53 seq1088 102 9e-17 seq234 89.7 6e-13 seq1759 86.0 7e-12 seq406 86.0 7e-12 seq268 84.2 2e-11 seq1752 82.4 9e-11 seq1188 82.4 9e-11 >seq1639 Length=5101707 Score = 223 bits (246), Expect = 4e-53 Identities = 414/596 (69%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | |||||| || || ||| ||||| |||||||||||||| ||||| || || Sbjct 2279740 TGTAGAGTAAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTG 2279799 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| ||||| || || | || ||||||||||| ||||| || | || ||||||| || Sbjct 2279800 AGAAAGTTAACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGA-TGGAGCAAAAGCTT 2279858 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGC-AAAATTTGC 93258 ||||| || || || ||||| || || || || ||||| ||||| || || |||| Sbjct 2279859 CCAGAGAAGAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGA 2279918 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | || | | ||||||||| | ||||| | ||||| ||| | ||||| | || Sbjct 2279919 G--AT--CCGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGT 2279974 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || ||| |||||| | ||||| ||| | |||| || || ||||||| | Sbjct 2279975 TTCAATCGCGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAG 2280034 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| |||||| || || || | || || || || || ||||| || |||||| | Sbjct 2280035 GAGACTATACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACG 2280094 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATAC 93497 || |||| || || || || || | |||| ||||||| || || || | Sbjct 2280095 CGCCTCCGAGACTTGAACATC-GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTC 2280153 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 | || ||||| || || ||||| | | || || || || || ||| | || || | Sbjct 2280154 CGTCAGATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGA 2280213 Query 93558 G---CTTATCCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | || ||||||||| ||| | |||| ||| ||||| |||||||| | ||||| ||| Sbjct 2280214 GATTGTTCTCCCAATCGCGATTG-TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAAC 2280272 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||||||| ||||| |||||||| ||||| || ||| | || || ||||| || || Sbjct 2280273 GATGCTTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACAT 2280328 >seq1088 Length=3726791 Score = 102 bits (112), Expect = 9e-17 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 || ||||||| ||||||||||||||||||||||||| ||||| |||||| | || || | Sbjct 1718116 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAG 1718175 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| |||||||| ||||||| |||| ||| Sbjct 1718176 GGCGTGGGTTCAAACCCCACTTCTGACAA--TATTTTTG 1718212 >seq234 Length=2418110 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||||||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 914395 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 914336 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||| || |||||| |||||| |||| || || Sbjct 914335 TGGGTTCAAATCCCACATCTGACATAATTTTTTTT 914301 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1660100 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1660157 Query 126325 GGGTTCGAACCCCACACCTGACAAAT 126350 |||||| || |||||| ||| ||||| Sbjct 1660158 GGGTTCAAATCCCACAGCTGTCAAAT 1660183 >seq1759 Length=1494911 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1417529 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 1417586 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 1417587 GCGTGGGTTCAAACCCCACTTCTGACA 1417613 >seq406 Length=3140938 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2599246 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2599305 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 2599306 TGGGTTCAAATCCCACTTCTGACA 2599329 >seq268 Length=2618192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1646013 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1645956 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| || || || |||||| || Sbjct 1645955 GGGTTCAAATCCCACAGCTGTCAATTTGTT-TTACTATTTTTCTT 1645912 >seq1752 Length=3388531 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2827342 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2827283 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 2827282 TGGGTTCAAATCCCACTTCTGACAAAT 2827256 >seq1188 Length=2619186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 958700 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 958643 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 958642 TTCAAATCCCACAGCTGTCAATTTTTT 958616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847268282560