Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1177 149 5e-31 seq1396 129 5e-25 seq793 122 7e-23 seq204 109 5e-19 seq236 102 7e-17 seq1208 98.7 8e-16 seq971 87.8 2e-12 >seq1177 Length=2734319 Score = 149 bits (164), Expect = 5e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || ||||| |||| ||||| || |||||||||| || || | | Sbjct 987725 AGATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCT 987784 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| || | || ||| || || |||||||| || ||||| || || | Sbjct 987785 CCGACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 987844 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || || ||||| |||||| |||| ||| ||||||| | ||||||||| Sbjct 987845 AGCAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACA 987904 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||| || |||||||| ||| | || || ||| | || || Sbjct 987905 ACATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGGTT 987944 >seq1396 Length=1446835 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || ||||| ||| | ||||| || || |||| || || ||||||| | Sbjct 399691 AGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCT 399750 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | ||| | | ||| || || |||||||||||||| ||||| || |||| Sbjct 399751 CTGACACAATCGACAACGTTAAAGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGATC 399810 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||||| || || || || ||| |||||||| ||| || | | ||||||| Sbjct 399811 AGCAGAGGCTTATCTTCGCTGGAAAGCAGCTAGAGGATGGCCGTACGTTGGCTGATTACA 399870 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | ||||| || ||||||||| | ||||| || Sbjct 399871 ATATTCAGAAGGAATCCACCCTCCATTTGGT 399901 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || ||||| | || ||||| | | || Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| |||||||| |||||||||||||||||||| || || Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || || | | || | | || |||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || ||||| |||| |||||| Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGGT 400376 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||||||||| || || |||| || || ||||| | | || Sbjct 400833 ATGCAGATTTTCGTGAAGACTTTAACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCC 400892 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || |||||||| ||||| || || || || Sbjct 400893 GACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 400952 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || |||||| | ||||| ||||| | | || |||||| Sbjct 400953 CAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGTCGCACACTGGCTGACTACAAC 401012 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || || ||||| ||| | || || || | || | || || ||||| Sbjct 401013 ATCCAGAAGGAATCGACCCTTCACTTGGTCCTCCGTCTCCGTGGTGGTTT 401062 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||| || || || |||| || || ||||||| | | Sbjct 399921 ATGCAAATTTTCGTCAAAACCCTAACTGGGAAGACTATCACCCTCGAGGTGGAAAGCTCT 399980 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| || || || |||||||||||||| ||||| ||||| Sbjct 399981 GACACAATCGACAACGTTAAAGCTAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAG 400040 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || | ||||| | | ||| || | || |||||| Sbjct 400041 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTCGCTGACTACAAC 400100 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || ||| | ||| | ||| Sbjct 400101 ATCCAGAAGGAGTCAACCCTTCATCTTGTT 400130 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || |||| | || ||||| | | | Sbjct 400377 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 400436 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| || ||||| || || || || || || Sbjct 400437 GACACCATCGACAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCGGACCAG 400496 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||||| |||||| || ||| | | ||||||||| Sbjct 400497 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGATTACAAC 400556 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| || ||| | || || || ||||| Sbjct 400557 ATCCAGAAAGAGTCAACCCTTCACTTGGTCTTGCG 400591 >seq793 Length=772624 Score = 122 bits (134), Expect = 7e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || ||||| | || || || || ||||||| || || || | | Sbjct 610705 AGATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCT 610764 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || | || ||| || || || || || || ||||| || || | Sbjct 610765 CTGACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACC 610824 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || || ||||| |||||| |||| ||| ||| ||| | ||||||||| Sbjct 610825 AGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 610884 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||| |||||||| ||| | || || ||| | || || Sbjct 610885 ACATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTT 610924 >seq204 Length=2333866 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| |||| || || || | || || || || ||| | Sbjct 1139132 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATC 1139191 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| || | ||| || | ||| || || ||||||||||| || || ||||| || Sbjct 1139192 ATCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1139251 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| |||||| | || || ||||| ||||| || || || | || || ||||||| Sbjct 1139252 TCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 1139311 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||| || |||||||| || | ||||| || Sbjct 1139312 CAACATCCAGAAAGAATCAACTCTTCATTTGGT 1139344 >seq236 Length=1640546 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || || ||||| |||| || || || | || || || || || | Sbjct 1089031 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAGTC 1089090 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || ||| | ||| || | ||| || || ||||||||||| || || ||||| || Sbjct 1089091 CTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1089150 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || || ||||| |||||| | || || |||||| || |||| || Sbjct 1089151 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGCACTCTCGCCGACTA 1089210 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || ||||| || Sbjct 1089211 CAACATCCAGAAGGAATCAAC 1089231 >seq1208 Length=4595443 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || ||||| || || || || || ||||| ||||| | || || |||| | | || Sbjct 3925581 GCAGATCTTTGTGAAGACGTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGCTCTGA 3925640 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | ||| | | ||| || |||||||||||||| || || || || || || || Sbjct 3925641 TACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCA 3925700 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||||| |||| || || ||| |||||||| | ||| | | || |||||||| Sbjct 3925701 GAAGCTTATCTTTGGTGGTAAGCAGCTAGAGGATGGTCACACACTTGCTGACTACAACAT 3925760 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||||| | ||||| || Sbjct 3925761 CCAAAAAGAGTCCACACTCCATTTGGT 3925787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || ||||| | || || || || | ||||| || | || | | Sbjct 3925349 AGATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCT 3925408 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | ||| || | || ||| ||||| |||||||| | ||||| | || | Sbjct 3925409 CTGATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACC 3925468 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || || ||||| |||||| | || ||| || ||| | | ||||||| Sbjct 3925469 AGCAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACA 3925528 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||| || || ||||| || | || || ||| | || || Sbjct 3925529 ACATCCAGAAGGAATCAACGCTCCACTTGGTTCTCCGGTT 3925568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || | ||| | || || || | | Sbjct 3925807 ATGCAAATTTTTGTGAAGACCCGTACTGGAAAGACCATTACTTTGGAGGTTGAGGGCTCA 3925866 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||| | ||||||||||| || ||||| || || Sbjct 3925867 GACACAATCGATAATGTCAAGGCGAAGATTGAGGACAAGGAGGGGATCCCACCAGACCAG 3925926 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||| |||| || ||| | || ||| ||||| || | ||||||||| Sbjct 3925927 CAGAGACTCATCTTTTCCGGTAAGCAGCTCGAAGATGGACGCACACTCGCTGATTACAAC 3925986 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || ||| | ||||| || Sbjct 3925987 ATCCAAAAGGAGTCTACCCTCCATTTGGT 3926015 >seq971 Length=4928269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||| |||||||| ||||||||||||||| | || |||||||| || || || | Sbjct 3107589 CAGGACAAAGAGGGTATACCACCCGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTC 3107530 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||| ||| ||| | | ||||||||||| || ||||| || || | ||| | || Sbjct 3107529 GAAGATGGCCGAACCTTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTC 3107470 Query 22429 TTG 22431 ||| Sbjct 3107469 TTG 3107467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718055594360