Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq672 125 1e-23 seq1429 91.5 3e-13 seq1752 87.8 4e-12 seq1690 87.8 4e-12 seq1590 87.8 4e-12 seq1301 87.8 4e-12 seq1088 87.8 4e-12 seq403 87.8 4e-12 seq329 87.8 4e-12 seq1639 86.0 1e-11 seq1810 84.2 4e-11 seq1626 84.2 4e-11 >seq672 Length=7828947 Score = 125 bits (138), Expect = 1e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| ||||| || || || || | ||||| || || ||| Sbjct 2306890 TCAATTCCCTCAATGGTTGATGGGCTAAAACCGGGTCAAAGAAAGATACTTTTCTGTGCA 2306831 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||| | ||| | ||| ||||| ||||| || || || |||||||||||||| || Sbjct 2306830 TTCAAGAGAAACTTAGTTAAAGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTATCAGAG 2306771 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 || | || ||||| || ||||||||||| || | || |||||||||| ||| Sbjct 2306770 CACTCAGCTTATCATCATGGCGAGCAGAGTCTTGCCAGTACTATCATAGGCATGGCGCAG 2306711 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||||||||||| ||||| || ||||| || | || || ||||| |||||| Sbjct 2306710 GATTATGTGGGCAGCAACAATATCAACTTACTTCAACCAAATGGTCAATTTGGT 2306657 >seq1429 Length=3043751 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 42999 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 42940 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 42939 AGCCCCAC 42932 >seq1752 Length=3388531 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1045935 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1045876 Query 142563 CCCCAC 142568 |||||| Sbjct 1045875 CCCCAC 1045870 >seq1690 Length=820647 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 194395 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 194454 Query 142563 CCCCAC 142568 |||||| Sbjct 194455 CCCCAC 194460 >seq1590 Length=335983 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 204637 AGAT-GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 204695 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 204696 CGAGCCCCAC 204705 >seq1301 Length=1695270 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 261623 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 261564 Query 142563 CCCCAC 142568 |||||| Sbjct 261563 CCCCAC 261558 >seq1088 Length=3726791 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 829662 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 829603 Query 142563 CCCCAC 142568 |||||| Sbjct 829602 CCCCAC 829597 >seq403 Length=801408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 143120 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 143061 Query 142563 CCCCAC 142568 |||||| Sbjct 143060 CCCCAC 143055 >seq329 Length=151530 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 71985 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 72044 Query 142563 CCCCAC 142568 |||||| Sbjct 72045 CCCCAC 72050 >seq1639 Length=5101707 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 3939173 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3939232 Query 142564 CCCAC 142568 ||||| Sbjct 3939233 CCCAC 3939237 >seq1810 Length=8348134 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 413460 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 413519 Query 142563 CCCCAC 142568 |||||| Sbjct 413520 CCCCAC 413525 >seq1626 Length=708261 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 544800 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 544741 Query 142563 CCCCAC 142568 ||||| Sbjct 544740 TCCCAC 544735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811199154904