Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1396 104 2e-17 seq1328 87.8 1e-12 seq793 86.0 4e-12 >seq1396 Length=1446835 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || || ||||| || |||| ||| | | Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| || || |||||| | || |||| Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| |||||||| ||||| | |||| |||| || ||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||| ||||| |||| || ||| | || ||||| Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 400375 >seq1328 Length=1576597 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | |||||||| ||||| || | || ||| | | Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTCC 272940 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| || ||||| || || | ||| |||| Sbjct 272941 GACACAATTGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACCAG 273000 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| ||||| || ||||| || |||||| ||| |||| ||| ||||| Sbjct 273001 CAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACAAT 273060 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGG-TATTACGTTTACGAGGAGGATAT 22064 ||||| ||||| || || || || ||| | ||| ||| | ||||| ||||| Sbjct 273061 ATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGA-GAGGA-GATAT 273110 >seq793 Length=772624 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | |||||| | || ||||| ||||| || | || || | | Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| || |||||||| || | ||| |||| Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||| || || ||||| ||||||||| || ||||||||||||| Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| || || || |||| | || ||| |||| || Sbjct 610887 ATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGG 610933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358116315128176