Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1810 116 3e-21 >seq1810 Length=8348134 Score = 116 bits (128), Expect = 3e-21 Identities = 193/275 (70%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || |||||||||||| || || || | | Sbjct 6693761 ACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAGA 6693820 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| ||||| || || | || |||||||| Sbjct 6693821 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAAC 6693880 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||||| | || | || ||||| || Sbjct 6693881 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGGAGGATTCCAAGCC 6693940 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| ||||||| || ||| | |||||||| || || | ||| || || || | Sbjct 6693941 GACATTATGATTCGTCGATCATCAGGATTATTCTTGATCTTGTTAAT-TAC-ATCTA--A 6693996 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| ||||| ||||||| Sbjct 6693997 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 6694031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362074640960