Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq204 91.5 1e-13 >seq204 Length=2333866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| || || ||||||| |||||| || || ||||| ||||||||||| || Sbjct 1139363 ACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 1139304 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || |||| |||||||| || ||||| || || | || ||||||||| || Sbjct 1139303 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGG 1139244 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG-- 34077 | | || ||||| ||| | ||| ||||| | || | | ||| Sbjct 1139243 GATTCCTTCCTTGTC---------TTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGA 1139193 Query 34078 -CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 |||| ||| |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 1139192 TGATTCAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 Query 34131 T 34131 | Sbjct 1139132 T 1139132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052992599088