Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq236 152 1e-31 seq204 152 1e-31 seq1125 140 8e-28 seq1396 138 3e-27 seq793 125 2e-23 seq1328 107 5e-18 seq1208 87.8 4e-12 seq1470 84.2 5e-11 >seq236 Length=1640546 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||||| ||| ||| || ||||| || ||||||||| Sbjct 1089261 CCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCG 1089202 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||||| || ||||| |||| ||||| || |||| Sbjct 1089201 AGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 1089142 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 1089141 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACC 1089082 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || || || || ||||| |||||||| Sbjct 1089081 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1089035 >seq204 Length=2333866 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||||| || |||||| ||||| || || |||||||| || | |||||| Sbjct 1139348 AAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTC 1139289 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| ||||||||||| |||||||| | ||| || ||| |||||||||||| || || Sbjct 1139288 TTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTC 1139229 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||| || |||||||| || || || | ||| ||||| || || || || || || Sbjct 1139228 TTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGT 1139169 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| || || || || ||||| ||||||||| Sbjct 1139168 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 1139135 >seq1125 Length=2998257 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| ||| ||| || ||||| || |||||||| Sbjct 292749 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCT 292808 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||||||||| | || ||||| ||||| |||| ||||| || |||| Sbjct 292809 AAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 292868 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || || || || || || | || || || || Sbjct 292869 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACC 292928 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 292929 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 292975 >seq1396 Length=1446835 Score = 138 bits (152), Expect = 3e-27 Identities = 172/233 (74%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||| || ||||| || ||||| || Sbjct 401059 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 401000 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| ||||| || | |||||||| |||||||| |||||||| || ||||| Sbjct 400999 AGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGG---TCTGGA 400943 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 ||| ||||| || |||||||| || || |||||||| || || | ||| ||| Sbjct 400942 GGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTC--- 400886 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||||||||| | |||||| ||||| |||||||| Sbjct 400885 TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | |||| || || || ||||| |||||||| || Sbjct 400831 CCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 400772 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||||| || |||||||| |||||||| || || Sbjct 400771 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 400712 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || |||||||| || || | || |||| || Sbjct 400711 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTC---TCC 400655 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || || |||| |||||||||||| |||||||| Sbjct 400654 ACCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || || | || || || || || || || ||||| || ||| Sbjct 400567 TCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAG 400508 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||||| |||||||| || || || |||||||| Sbjct 400507 ATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTG 400448 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || | ||||| ||||| || || ||||||||| Sbjct 400447 TCGATGGTGTCTGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTG 400391 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 400390 ACGAAAATCTGCAT 400377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || | || | |||||||| | ||||||||| || ||| Sbjct 400339 TCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAG 400280 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||| || || || || ||||| ||||| ||||| || || Sbjct 400279 ATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTG 400220 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || | ||||| ||||| || |||| |||||| Sbjct 400219 TCGATGGTGTCGGAGCTC---TCCACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTG 400163 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 400162 ACGAAAATTTGCAT 400149 >seq793 Length=772624 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || ||| |||||||| || ||||| || Sbjct 611161 CCACCACGAAGACGAAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCA 611102 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || || | ||||||||| | || || || || ||||| || | |||| | | | Sbjct 611101 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGA--- 611045 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||||||||| || |||||||| || ||||| ||||| || |||| ||| |||| Sbjct 611044 GGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTC--- 610988 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| || |||||||||||||| || |||||||| Sbjct 610987 TCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || || ||||| | || || || ||||||| ||||| || ||||| Sbjct 610898 TTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 610839 Query 288342 GATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| | | |||| | | | || || ||||||||||||||||| || || || || Sbjct 610838 GATTAATCTTTGCTGGTCCGGA---GGAATGCCTTCTTTATCCTGGATCTTTGCCTTAAC 610782 Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || |||| || || ||||| ||||| ||||| || || || || Sbjct 610781 ATTGTCGATGGTGTCAGAGCTC---TCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGT 610725 Query 288456 CTTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 610724 TTTCACGAAAATTTGCAT 610707 >seq1328 Length=1576597 Score = 107 bits (118), Expect = 5e-18 Identities = 169/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| | || |||| || || || ||||| || || | Sbjct 273339 CATG-CCACCACGAAGACGAAGGAGAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAAT 273281 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || || | ||| || || || ||||| || | ||| || | Sbjct 273280 CCGCAAGCGTACGACCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGG---T 273224 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 |||| ||||||||||||||| ||||| || || || ||||| || || | ||| || Sbjct 273223 CTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGC 273164 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || || || || |||||||| || |||||||| || || |||||||| Sbjct 273163 T---TTCGACCTCAAGTGTTATAGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 >seq1208 Length=4595443 Score = 87.8 bits (96), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || | ||| | ||| ||||||||||| || ||||| || Sbjct 3925805 CCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCA 3925746 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||| | || || |||| || || || | ||||| || ||| || ||| Sbjct 3925745 AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGG 3925686 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || || || || || ||||| ||||| || |||| ||| ||| ||| Sbjct 3925685 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCT---TTCA 3925629 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || || | ||||| || || || |||| ||||| || || |||||| Sbjct 3925628 ACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 >seq1470 Length=2917085 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/182 (71%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || || || || || || | |||||| || ||| || || || ||||| || | ||| Sbjct 2171935 TTGTAATCAGCAAGAGTCCTTCCGTCATC-AATAGTA--CCGGCAAAGATAAGTCTCTGA 2171879 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC- 288413 || | ||||||||||| || ||||| || || || |||||||| || |||| ||| Sbjct 2171878 TGGAACGGAGGGATTCCTTCCTTGTCCTGTATCTTTGCCTTCACGTTATCAATAGTATCA 2171819 Query 288414 --GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 ||| ||| || || | || || || || || |||||||||||||| || |||||| Sbjct 2171818 GAGCT---TTCAACCTCCAAAGTAATGGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGC 2171762 Query 288472 AT 288473 || Sbjct 2171761 AT 2171760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625017758032