Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1639 129 1e-24 seq713 93.3 9e-14 >seq1639 Length=5101707 Score = 129 bits (142), Expect = 1e-24 Identities = 565/875 (65%), Gaps = 22/875 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || || || ||||| ||||| ||||| || | ||| | || ||| Sbjct 2280325 TTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGG 2280266 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGCGAGAAACTCAATG 242992 ||| | || ||||| ||| | | || ||| ||| ||| ||| | || ||||| | Sbjct 2280265 ACCGCTGAAGAAGTAGATCT-ATCACAAGACAATCG-CGATTGGGAGAACAATCTCAACG 2280208 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| |||||||| |||||||||||| | || | ||| ||||| | || || || || | Sbjct 2280207 ACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCG 2280148 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 || | || ||||| || | | || ||| || || || | ||||| || Sbjct 2280147 TGTTAGAGAATCTCGCTTCTCGA--TTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 2280090 Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170 || |||| || ||| | | ||| || || || || ||| ||| ||| | Sbjct 2280089 TTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCT 2280030 Query 243171 CGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCT-TTTCGACGCCATCGAAAACA 243229 ||| || ||| |||| | ||||| || | | || ||||| ||| || |||| | Sbjct 2280029 CGATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTCG-CGCGATTGAAACGA 2279971 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---TAAAT 243286 |||| || || || || | ||||| ||| ||| | || ||| | || Sbjct 2279970 TTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGA---CGGATCTCAAA 2279914 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || ||||| || | || || | | || |||||||| || | || || || || | Sbjct 2279913 CCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCT 2279854 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 | ||| ||||||| ||||| ||| |||| | |||||||| | | | || |||| Sbjct 2279853 TTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACG 2279794 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465 | || ||| || ||||| ||| | ||| | |||| | ||||| | || || Sbjct 2279793 AATTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCT-TGCTTACTCTACACACTC 2279735 Query 243466 CTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| | | ||||| | | | |||| |||| |||| | || || || || | Sbjct 2279734 CTCAAAACAAAGCT--GAGTGAAGAACGTATCAAGTCAATCGTTTGTGATGCGGTCGAGA 2279677 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || | || || | |||||||| |||| ||| | | |||| |||||| ||| Sbjct 2279676 TTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGTATGAACCGTGATT 2279617 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||| || || || || || || | |||| || ||||| || | | Sbjct 2279616 TGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCTCTTGGGTACGGTA 2279557 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||| | | || ||||||| | ||||| || || || ||||| ||||||| Sbjct 2279556 AGGTGTACGGTGCGACTAATCCCTTTGATTGGATGGAACTAATCTCTCTTCAGGGGAAAA 2279497 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 | ||||| ||||| || ||||| ||||||| ||| Sbjct 2279496 CCAACTTTTTCGAGAAACGTGTTGGTGATTACCAA 2279462 >seq713 Length=2889723 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 30996 CTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTTCGAATCTCTTCCG 31055 ||||||||||||||||||||| ||||| | ||| ||| | | || |||||||| | Sbjct 199116 CTTCTTCTTCCTCGGGTGTGAAGTCGTTCTTGATGTTGAAGGTTGTGCGGATCTCTTCTG 199057 Query 31056 GAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCAAGCATACTCTTTA 31115 |||| || ||||| || | ||||| | || ||||||| || ||||||| |||| | Sbjct 199056 GAGTCTTGCCTTTGATCATATCAGCCACAGTTTGACATGTAAGGTCAAGCAGGTTCTTGA 198997 Query 31116 TGTTCAAGAAATTCGC 31131 |||||| | |||| || Sbjct 198996 TGTTCAGGTAATTAGC 198981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852530016400